7KAH
Cryo-EM structure of the Sec complex from S. cerevisiae, wild-type, class without Sec62
External Resource: Annotation
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: OPM
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: MemProtMD
- Membrane Protein Annotation: mpstruc
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | SecY | e7kahA1 | A: alpha complex topology | X: Preprotein translocase SecY subunit (From Topology) | H: Preprotein translocase SecY subunit (From Topology) | T: Preprotein translocase SecY subunit | F: SecY | ECOD (1.6) |
B [auth C] | SecE_1 | e7kahC1 | A: extended segments | X: Preprotein translocase SecE subunit (From Topology) | H: Preprotein translocase SecE subunit (From Topology) | T: Preprotein translocase SecE subunit | F: SecE_1 | ECOD (1.6) |
C [auth B] | Sec61_beta | e7kahB1 | A: extended segments | X: Sec-beta subunit (From Topology) | H: Sec-beta subunit (From Topology) | T: Sec-beta subunit | F: Sec61_beta | ECOD (1.6) |
F | TPR_11_2 | e7kahF1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: TPR_11_2 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF10559 | Plug domain of Sec61p (Plug_translocon) | Plug domain of Sec61p | The Sec61/SecY translocon mediates translocation of proteins across the membrane and integration of membrane proteins into the lipid bilayer. The structure of the translocon revealed a plug domain blocking the pore on the lumenal side.The plug is unl ... | Domain | |
PF00344 | SecY (SecY) | SecY | - | Family | |
B [auth C] | PF00584 | SecE/Sec61-gamma subunits of protein translocation complex (SecE) | SecE/Sec61-gamma subunits of protein translocation complex | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR002208 | SecY/SEC61-alpha family | Family | |
IPR030659 | SecY conserved site | Conserved Site | |
IPR023201 | SecY domain superfamily | Homologous Superfamily | |
IPR019561 | Translocon Sec61/SecY, plug domain | Domain | |
B [auth C] | IPR008158 | Protein translocase SEC61 complex, gamma subunit | Family |
B [auth C] | IPR001901 | Protein translocase complex, SecE/Sec61-gamma subunit | Family |
B [auth C] | IPR023391 | Protein translocase SecE domain superfamily | Homologous Superfamily |
C [auth B] | IPR016482 | Protein transport protein SecG/Sec61-beta/Sbh | Family |
C [auth B] | IPR030671 | Protein transport Sec61-beta/Sbh | Family |
IPR018253 | DnaJ domain, conserved site | Conserved Site | |
IPR036869 | Chaperone J-domain superfamily | Homologous Superfamily | |
IPR004179 | Sec63 domain | Domain | |
IPR001623 | DnaJ domain | Domain | |
IPR014756 | Immunoglobulin E-set | Homologous Superfamily | |
IPR018624 | Translocation protein Sec66 | Family | |
IPR011990 | Tetratricopeptide-like helical domain superfamily | Homologous Superfamily | |
IPR019734 | Tetratricopeptide repeat | Repeat |
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Alpha-helical polytopic | General secretory pathway (Sec) | Protein translocase |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Chains | External Link | Comment |
---|---|---|
PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
Chains | External Link | Comment |
---|---|---|
MemProtMD | Annotated as membrane protein by MemProtMD |