7K23 | pdb_00007k23

Murine polyomavirus hexavalent capsomer with 8A7H5 Fab, subparticle reconstruction

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
G [auth E]	SCOP2B Superfamily	Group I dsDNA viruses	8096612	3000939	SCOP2B (2022-06-29)
F [auth D]	SCOP2B Superfamily	Group I dsDNA viruses	8096612	3000939	SCOP2B (2022-06-29)
E [auth C]	SCOP2B Superfamily	Group I dsDNA viruses	8096612	3000939	SCOP2B (2022-06-29)
D [auth B]	SCOP2 Family	papovaviridae-like vp	8096611	4003485	SCOP2 (2022-06-29)
D [auth B]	SCOP2 Superfamily	Group I dsDNA viruses	8096612	3000939	SCOP2 (2022-06-29)
C [auth A]	SCOP2B Superfamily	Group I dsDNA viruses	8096612	3000939	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
G [auth E]	AAA_lid_RFC1	e7k23E1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
F [auth D]	ADH_N	e7k23D1	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: ADH_N	ECOD (v295)
E [auth C]	AAA_lid_RFC1	e7k23C1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
D [auth B]	AAA_lid_RFC1	e7k23B1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
C [auth A]	AAA_lid_RFC1	e7k23A1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
O [auth H6]	ADH_N	e7k23H61	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: ADH_N	ECOD (v295)
M [auth H5]	ADH_N	e7k23H51	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: ADH_N	ECOD (v295)
K [auth H4]	ADH_N	e7k23H41	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: ADH_N	ECOD (v295)
I [auth H3]	ADH_N	e7k23H31	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: ADH_N	ECOD (v295)
B [auth H2]	ADH_N	e7k23H21	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: ADH_N	ECOD (v295)
N [auth L6]	ADH_N	e7k23L61	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: ADH_N	ECOD (v295)
L [auth L5]	ADH_N	e7k23L51	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: ADH_N	ECOD (v295)
J [auth L4]	ADH_N	e7k23L41	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: ADH_N	ECOD (v295)
H [auth L3]	ADH_N	e7k23L31	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: ADH_N	ECOD (v295)
A [auth L2]	ADH_N	e7k23L21	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: ADH_N	ECOD (v295)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C [auth A], D [auth B], E [auth C], F [auth D], G [auth E]	Capsid protein VP1	structural molecule activity	virion attachment to host cell biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell viral process viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction symbiont entry into host cell symbiont entry into host endocytosis involved in viral entry into host cell	viral capsid icosahedral viral capsid T=7 icosahedral viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle
B [auth H2], I [auth H3], K [auth H4], M [auth H5], O [auth H6]	8A7H5 Fab heavy chain	-	-	-
A [auth L2], H [auth L3], J [auth L4], L [auth L5], N [auth L6]	8A7H5 Fab light chain	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C [auth A], D [auth B], E [auth C], F [auth D], G [auth E]	IPR011222	Double-stranded DNA virus, group I, capsid	Homologous Superfamily
C [auth A], D [auth B], E [auth C], F [auth D], G [auth E]	IPR000662	Capsid protein VP1,Polyomavirus	Family
C [auth A], D [auth B], E [auth C], F [auth D], G [auth E]	IPR036931	Polyomavirus capsid protein VP1 superfamily	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.