7FDE
CryoEM Structures of Reconstituted V-ATPase, Oxr1 bound V1
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth O] | SCOP2B Superfamily | Vacuolar ATP synthase subunit C | 8042806 | 3001744 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth O] | V-ATPase_C_1st | e7fdeO1 | A: alpha bundles | X: helical bundle domain in vacuolar ATP synthase subunit C (From Topology) | H: helical bundle domain in vacuolar ATP synthase subunit C (From Topology) | T: helical bundle domain in vacuolar ATP synthase subunit C | F: V-ATPase_C_1st | ECOD (1.6) |
A [auth O] | V-ATPase_C_3rd | e7fdeO3 | A: a+b two layers | X: Alpha-beta plaits | H: ferredoxin-like domain in vacuolar ATP synthase subunit C (From Topology) | T: ferredoxin-like domain in vacuolar ATP synthase subunit C | F: V-ATPase_C_3rd | ECOD (1.6) |
A [auth O] | V-ATPase_C_2nd | e7fdeO2 | A: a+b two layers | X: Alpha-beta plaits | H: ferredoxin-like domain in vacuolar ATP synthase subunit C (From Topology) | T: ferredoxin-like domain in vacuolar ATP synthase subunit C | F: V-ATPase_C_2nd | ECOD (1.6) |
B [auth G] | vATP-synt_E_C | e7fdeG1 | A: a+b two layers | X: FwdE/GAPDH domain-like | H: V-type ATPase subunit E (From Topology) | T: V-type ATPase subunit E | F: vATP-synt_E_C | ECOD (1.6) |
B [auth G] | vATP-synt_E_N | e7fdeG2 | A: extended segments | X: Helical region in V-type proton ATPase subunit E (From Topology) | H: Helical region in V-type proton ATPase subunit E (From Topology) | T: Helical region in V-type proton ATPase subunit E | F: vATP-synt_E_N | ECOD (1.6) |
J [auth K] | vATP-synt_E_C | e7fdeK2 | A: a+b two layers | X: FwdE/GAPDH domain-like | H: V-type ATPase subunit E (From Topology) | T: V-type ATPase subunit E | F: vATP-synt_E_C | ECOD (1.6) |
J [auth K] | vATP-synt_E_N | e7fdeK1 | A: extended segments | X: Helical region in V-type proton ATPase subunit E (From Topology) | H: Helical region in V-type proton ATPase subunit E (From Topology) | T: Helical region in V-type proton ATPase subunit E | F: vATP-synt_E_N | ECOD (1.6) |
N [auth I] | vATP-synt_E_C | e7fdeI1 | A: a+b two layers | X: FwdE/GAPDH domain-like | H: V-type ATPase subunit E (From Topology) | T: V-type ATPase subunit E | F: vATP-synt_E_C | ECOD (1.6) |
N [auth I] | vATP-synt_E_N | e7fdeI2 | A: extended segments | X: Helical region in V-type proton ATPase subunit E (From Topology) | H: Helical region in V-type proton ATPase subunit E (From Topology) | T: Helical region in V-type proton ATPase subunit E | F: vATP-synt_E_N | ECOD (1.6) |
C [auth H] | V-ATPase_G | e7fdeH1 | A: extended segments | X: V-type proton ATPase subunit G (From Topology) | H: V-type proton ATPase subunit G (From Topology) | T: V-type proton ATPase subunit G | F: V-ATPase_G | ECOD (1.6) |
K [auth L] | V-ATPase_G | e7fdeL1 | A: extended segments | X: V-type proton ATPase subunit G (From Topology) | H: V-type proton ATPase subunit G (From Topology) | T: V-type proton ATPase subunit G | F: V-ATPase_G | ECOD (1.6) |
O [auth J] | V-ATPase_G | e7fdeJ1 | A: extended segments | X: V-type proton ATPase subunit G (From Topology) | H: V-type proton ATPase subunit G (From Topology) | T: V-type proton ATPase subunit G | F: V-ATPase_G | ECOD (1.6) |
D [auth A] | ATP-synt_ab_N | e7fdeA3 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: ATP-synt_ab_N | ECOD (1.6) |
D [auth A] | ATP-synt_ab_C | e7fdeA1 | A: alpha superhelices | X: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology) | H: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology) | T: C-terminal domain of alpha and beta subunits of F1 ATP synthase | F: ATP-synt_ab_C | ECOD (1.6) |
D [auth A] | ATP-synt_ab_Xtn | e7fdeA4 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Single hybrid motif | F: ATP-synt_ab_Xtn | ECOD (1.6) |
D [auth A] | ATP-synt_ab | e7fdeA2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: ATP-synt_ab | ECOD (1.6) |
F [auth C] | ATP-synt_ab_N | e7fdeC1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: ATP-synt_ab_N | ECOD (1.6) |
F [auth C] | ATP-synt_ab_C | e7fdeC2 | A: alpha superhelices | X: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology) | H: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology) | T: C-terminal domain of alpha and beta subunits of F1 ATP synthase | F: ATP-synt_ab_C | ECOD (1.6) |
F [auth C] | ATP-synt_ab_Xtn | e7fdeC3 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Single hybrid motif | F: ATP-synt_ab_Xtn | ECOD (1.6) |
F [auth C] | ATP-synt_ab | e7fdeC4 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: ATP-synt_ab | ECOD (1.6) |
H [auth E] | ATP-synt_ab_N | e7fdeE2 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: ATP-synt_ab_N | ECOD (1.6) |
H [auth E] | ATP-synt_ab_C | e7fdeE4 | A: alpha superhelices | X: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology) | H: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology) | T: C-terminal domain of alpha and beta subunits of F1 ATP synthase | F: ATP-synt_ab_C | ECOD (1.6) |
H [auth E] | ATP-synt_ab_Xtn | e7fdeE1 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Single hybrid motif | F: ATP-synt_ab_Xtn | ECOD (1.6) |
H [auth E] | ATP-synt_ab | e7fdeE3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: ATP-synt_ab | ECOD (1.6) |
E [auth B] | ATP-synt_ab_N | e7fdeB3 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: ATP-synt_ab_N | ECOD (1.6) |
E [auth B] | ATP-synt_ab_C | e7fdeB2 | A: alpha superhelices | X: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology) | H: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology) | T: C-terminal domain of alpha and beta subunits of F1 ATP synthase | F: ATP-synt_ab_C | ECOD (1.6) |
E [auth B] | ATP-synt_ab | e7fdeB1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: ATP-synt_ab | ECOD (1.6) |
G [auth D] | ATP-synt_ab_N | e7fdeD3 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: ATP-synt_ab_N | ECOD (1.6) |
G [auth D] | ATP-synt_ab_C | e7fdeD2 | A: alpha superhelices | X: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology) | H: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology) | T: C-terminal domain of alpha and beta subunits of F1 ATP synthase | F: ATP-synt_ab_C | ECOD (1.6) |
G [auth D] | ATP-synt_ab | e7fdeD1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: ATP-synt_ab | ECOD (1.6) |
I [auth F] | ATP-synt_ab_N | e7fdeF3 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: ATP-synt_ab_N | ECOD (1.6) |
I [auth F] | ATP-synt_ab_C | e7fdeF2 | A: alpha superhelices | X: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology) | H: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology) | T: C-terminal domain of alpha and beta subunits of F1 ATP synthase | F: ATP-synt_ab_C | ECOD (1.6) |
I [auth F] | ATP-synt_ab | e7fdeF1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: ATP-synt_ab | ECOD (1.6) |
L [auth M] | ATP-synt_D | e7fdeM1 | A: alpha bundles | X: V-type proton ATPase subunit D (From Topology) | H: V-type proton ATPase subunit D (From Topology) | T: V-type proton ATPase subunit D | F: ATP-synt_D | ECOD (1.6) |
M [auth N] | ATP-synt_F | e7fdeN1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: AtpF-like (From Topology) | T: AtpF-like | F: ATP-synt_F | ECOD (1.6) |
P | TLD | e7fdeP1 | A: beta barrels | X: Lipocalins/Streptavidin | H: TLDC domain of oxidation resistance protein 2 (From Topology) | T: TLDC domain of oxidation resistance protein 2 | F: TLD | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth O] | PF03223 | V-ATPase subunit C (V-ATPase_C) | V-ATPase subunit C | - | Family |
B [auth G], J [auth K], N [auth I] | PF01991 | ATP synthase (E/31 kDa) subunit (vATP-synt_E) | ATP synthase (E/31 kDa) subunit | - | Family |
C [auth H], K [auth L], O [auth J] | PF03179 | Vacuolar (H+)-ATPase G subunit (V-ATPase_G) | Vacuolar (H+)-ATPase G subunit | - | Coiled-coil |
D [auth A], F [auth C], H [auth E] | PF00006 | ATP synthase alpha/beta family, nucleotide-binding domain (ATP-synt_ab) | ATP synthase alpha/beta family, nucleotide-binding domain | This entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho. | Domain |
D [auth A], F [auth C], H [auth E] | PF22919 | C-terminal domain of V and A type ATP synthase (ATP-synt_VA_C) | C-terminal domain of V and A type ATP synthase | This entry represents a small alpha helical domain found at the C-terminus of a variety of ATP synthases. | Domain |
D [auth A], F [auth C], H [auth E] | PF16886 | ATPsynthase alpha/beta subunit N-term extension (ATP-synt_ab_Xtn) | ATPsynthase alpha/beta subunit N-term extension | - | Family |
D [auth A], F [auth C], H [auth E] | PF02874 | ATP synthase alpha/beta family, beta-barrel domain (ATP-synt_ab_N) | ATP synthase alpha/beta family, beta-barrel domain | This family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella. | Domain |
E [auth B], G [auth D], I [auth F] | PF00006 | ATP synthase alpha/beta family, nucleotide-binding domain (ATP-synt_ab) | ATP synthase alpha/beta family, nucleotide-binding domain | This entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho. | Domain |
E [auth B], G [auth D], I [auth F] | PF22919 | C-terminal domain of V and A type ATP synthase (ATP-synt_VA_C) | C-terminal domain of V and A type ATP synthase | This entry represents a small alpha helical domain found at the C-terminus of a variety of ATP synthases. | Domain |
E [auth B], G [auth D], I [auth F] | PF02874 | ATP synthase alpha/beta family, beta-barrel domain (ATP-synt_ab_N) | ATP synthase alpha/beta family, beta-barrel domain | This family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella. | Domain |
L [auth M] | PF01813 | ATP synthase subunit D (ATP-synt_D) | ATP synthase subunit D | - | Family |
M [auth N] | PF01990 | ATP synthase (F/14-kDa) subunit (ATP-synt_F) | ATP synthase (F/14-kDa) subunit | - | Family |
PF07534 | TLD (TLD) | TLD | This domain is predicted to be an enzyme [1] and is often found associated with Pfam:PF01476. It's structure consists of a beta-sandwich surrounded by two helices and two one-turn helices [2]. | Domain |