Annotations: 7EKQ

CrClpP-S2c

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
G	SCOP2 Family	Clp protease, ClpP subunit	8105382	4003574	SCOP2 (2022-06-29)
G	SCOP2 Superfamily	ClpP/crotonase	8105383	3000033	SCOP2 (2022-06-29)
E	SCOP2B Superfamily	ClpP/crotonase	8105383	3000033	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	ClpP/crotonase	8105383	3000033	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	ClpP/crotonase	8105385	3000033	SCOP2B (2022-06-29)
D	SCOP2 Family	Clp protease, ClpP subunit	8105384	4003574	SCOP2 (2022-06-29)
D	SCOP2 Superfamily	ClpP/crotonase	8105385	3000033	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	ClpP/crotonase	8105385	3000033	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
O	G-gamma	e7ekqO1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: G-gamma	ECOD (v295.2)
N	AAA_lid_RFC1	e7ekqN1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: AAA_lid_RFC1	ECOD (v295.2)
L	G-gamma	e7ekqL1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: G-gamma	ECOD (v295.2)
K	MlaD	e7ekqK1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: MlaD	ECOD (v295.2)
I	G-gamma	e7ekqI1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: G-gamma	ECOD (v295.2)
M	G-gamma	e7ekqM1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: G-gamma	ECOD (v295.2)
J	MlaD	e7ekqJ1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: MlaD	ECOD (v295.2)
H	G-gamma	e7ekqH1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: G-gamma	ECOD (v295.2)
G	G-gamma	e7ekqG1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: G-gamma	ECOD (v295.2)
E	G-gamma	e7ekqE1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: G-gamma	ECOD (v295.2)
C	G-gamma	e7ekqC1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: G-gamma	ECOD (v295.2)
F	G-gamma	e7ekqF1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: G-gamma	ECOD (v295.2)
D	G-gamma	e7ekqD1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: G-gamma	ECOD (v295.2)
B	G-gamma	e7ekqB1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: G-gamma	ECOD (v295.2)
S	G-gamma	e7ekqS1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: G-gamma	ECOD (v295.2)
R	G-gamma	e7ekqR1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: G-gamma	ECOD (v295.2)
Q	G-gamma	e7ekqQ1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: G-gamma	ECOD (v295.2)
P	G-gamma	e7ekqP1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: G-gamma	ECOD (v295.2)
A	AAA_lid_RFC1	e7ekqA1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: AAA_lid_RFC1	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
O	1.10.1780.10	Mainly Alpha	Orthogonal Bundle	Double Clp-N motif	Clp, N-terminal domain	CATH (utative)
N	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (utative)
K	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (utative)
I	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (utative)
G	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (utative)
E	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (utative)
A	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
O	PF02861	Clp repeat (R) N-terminal domain (Clp_N)	Clp repeat (R) N-terminal domain	-	Family
N	PF00574	Clp protease (CLP_protease)	Clp protease	The Clp protease has an active site catalytic triad. In E. coli Clp protease, ser-111, his-136 and asp-185 form the catalytic triad. Swiss:P48254 has lost all of these active site residues and is therefore inactive. Swiss:P42379 contains two large in ...	The Clp protease has an active site catalytic triad. In E. coli Clp protease, ser-111, his-136 and asp-185 form the catalytic triad. Swiss:P48254 has lost all of these active site residues and is therefore inactive. Swiss:P42379 contains two large insertions, Swiss:P42380 contains one large insertion.	Domain
L	PF00574	Clp protease (CLP_protease)	Clp protease	The Clp protease has an active site catalytic triad. In E. coli Clp protease, ser-111, his-136 and asp-185 form the catalytic triad. Swiss:P48254 has lost all of these active site residues and is therefore inactive. Swiss:P42379 contains two large in ...	The Clp protease has an active site catalytic triad. In E. coli Clp protease, ser-111, his-136 and asp-185 form the catalytic triad. Swiss:P48254 has lost all of these active site residues and is therefore inactive. Swiss:P42379 contains two large insertions, Swiss:P42380 contains one large insertion.	Domain
K	PF00574	Clp protease (CLP_protease)	Clp protease	The Clp protease has an active site catalytic triad. In E. coli Clp protease, ser-111, his-136 and asp-185 form the catalytic triad. Swiss:P48254 has lost all of these active site residues and is therefore inactive. Swiss:P42379 contains two large in ...	The Clp protease has an active site catalytic triad. In E. coli Clp protease, ser-111, his-136 and asp-185 form the catalytic triad. Swiss:P48254 has lost all of these active site residues and is therefore inactive. Swiss:P42379 contains two large insertions, Swiss:P42380 contains one large insertion.	Domain
I	PF00574	Clp protease (CLP_protease)	Clp protease	The Clp protease has an active site catalytic triad. In E. coli Clp protease, ser-111, his-136 and asp-185 form the catalytic triad. Swiss:P48254 has lost all of these active site residues and is therefore inactive. Swiss:P42379 contains two large in ...	The Clp protease has an active site catalytic triad. In E. coli Clp protease, ser-111, his-136 and asp-185 form the catalytic triad. Swiss:P48254 has lost all of these active site residues and is therefore inactive. Swiss:P42379 contains two large insertions, Swiss:P42380 contains one large insertion.	Domain
B, D, F	PF00574	Clp protease (CLP_protease)	Clp protease	The Clp protease has an active site catalytic triad. In E. coli Clp protease, ser-111, his-136 and asp-185 form the catalytic triad. Swiss:P48254 has lost all of these active site residues and is therefore inactive. Swiss:P42379 contains two large in ...	The Clp protease has an active site catalytic triad. In E. coli Clp protease, ser-111, his-136 and asp-185 form the catalytic triad. Swiss:P48254 has lost all of these active site residues and is therefore inactive. Swiss:P42379 contains two large insertions, Swiss:P42380 contains one large insertion.	Domain
R, S	PF00166	Chaperonin 10 Kd subunit (Cpn10)	Chaperonin 10 Kd subunit	This family contains GroES and Gp31-like chaperonins. Gp31 is a functional co-chaperonin that is required for the folding and assembly of Gp23, a major capsid protein, during phage morphogenesis [1].	Domain
Q	PF00166	Chaperonin 10 Kd subunit (Cpn10)	Chaperonin 10 Kd subunit	This family contains GroES and Gp31-like chaperonins. Gp31 is a functional co-chaperonin that is required for the folding and assembly of Gp23, a major capsid protein, during phage morphogenesis [1].	Domain
P	PF00166	Chaperonin 10 Kd subunit (Cpn10)	Chaperonin 10 Kd subunit	This family contains GroES and Gp31-like chaperonins. Gp31 is a functional co-chaperonin that is required for the folding and assembly of Gp23, a major capsid protein, during phage morphogenesis [1].	Domain
A	PF00574	Clp protease (CLP_protease)	Clp protease	The Clp protease has an active site catalytic triad. In E. coli Clp protease, ser-111, his-136 and asp-185 form the catalytic triad. Swiss:P48254 has lost all of these active site residues and is therefore inactive. Swiss:P42379 contains two large in ...	The Clp protease has an active site catalytic triad. In E. coli Clp protease, ser-111, his-136 and asp-185 form the catalytic triad. Swiss:P48254 has lost all of these active site residues and is therefore inactive. Swiss:P42379 contains two large insertions, Swiss:P42380 contains one large insertion.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
O	ATP-dependent Clp protease ATP-binding subunit CLPT4, chloroplastic	-	-	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure plastid organelle cytoplasm intracellular membrane-bounded organelle chloroplast
N	ATP-dependent Clp protease proteolytic subunit	peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity catalytic activity endopeptidase activity ATP-dependent peptidase activity ATP-dependent activity ATPase binding protein binding binding enzyme binding	proteolysis metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process catabolic process protein catabolic process protein quality control for misfolded or incompletely synthesized proteins macromolecule catabolic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure plastid organelle cytoplasm intracellular membrane-bounded organelle
L	ATP-dependent Clp protease proteolytic subunit	peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity catalytic activity endopeptidase activity ATP-dependent peptidase activity ATP-dependent activity ATPase binding protein binding binding enzyme binding	proteolysis metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process catabolic process protein catabolic process protein quality control for misfolded or incompletely synthesized proteins macromolecule catabolic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure plastid organelle cytoplasm intracellular membrane-bounded organelle
K	ATP-dependent Clp protease proteolytic subunit	peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity catalytic activity endopeptidase activity ATP-dependent peptidase activity ATP-dependent activity ATPase binding protein binding binding enzyme binding	proteolysis metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process catabolic process protein catabolic process protein quality control for misfolded or incompletely synthesized proteins macromolecule catabolic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure plastid organelle cytoplasm intracellular membrane-bounded organelle
I	ATP-dependent Clp protease proteolytic subunit	peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity catalytic activity endopeptidase activity ATP-dependent peptidase activity ATP-dependent activity ATPase binding protein binding binding enzyme binding	proteolysis metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process catabolic process protein catabolic process protein quality control for misfolded or incompletely synthesized proteins macromolecule catabolic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure plastid organelle cytoplasm intracellular membrane-bounded organelle
H, J, M	ATP-dependent Clp protease proteolytic subunit	peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity catalytic activity endopeptidase activity ATP-dependent peptidase activity ATP-dependent activity ATPase binding protein binding binding enzyme binding	proteolysis metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process catabolic process protein catabolic process protein quality control for misfolded or incompletely synthesized proteins macromolecule catabolic process	membrane-bounded organelle intracellular anatomical structure plastid intracellular membrane-bounded organelle intracellular organelle cellular anatomical structure plastid stroma organelle chloroplast stroma cytoplasm chloroplast
C, E, G	ATP-dependent Clp protease proteolytic subunit	peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity catalytic activity endopeptidase activity ATP-dependent peptidase activity ATP-dependent activity ATPase binding protein binding binding enzyme binding	proteolysis metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process catabolic process protein catabolic process protein quality control for misfolded or incompletely synthesized proteins macromolecule catabolic process	membrane-bounded organelle intracellular anatomical structure plastid intracellular membraneless organelle intracellular membrane-bounded organelle plastid thylakoid intracellular organelle cellular anatomical structure chloroplast thylakoid organelle membraneless organelle cytoplasm thylakoid chloroplast membrane-bounded organelle intracellular anatomical structure plastid intracellular membraneless organelle intracellular membrane-bounded organelle plastid thylakoid intracellular organelle cellular anatomical structure chloroplast thylakoid organelle membraneless organelle cytoplasm thylakoid chloroplast endopeptidase Clp complex protein-containing complex catalytic complex chloroplastic endopeptidase Clp complex plastid stroma chloroplast stroma
B, D, F	ATP-dependent Clp protease proteolytic subunit	peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity catalytic activity endopeptidase activity ATP-dependent peptidase activity ATP-dependent activity ATPase binding protein binding binding enzyme binding	proteolysis metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process catabolic process protein catabolic process protein quality control for misfolded or incompletely synthesized proteins macromolecule catabolic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure plastid organelle cytoplasm intracellular membrane-bounded organelle
R, S	Cpn20 co-chaperonin subunit	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding protein folding chaperone cation binding metal ion binding protein binding protein-folding chaperone binding	-	-
Q	Chaperonin 23	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding protein folding chaperone cation binding metal ion binding protein binding protein-folding chaperone binding	-	-
P	Chaperonin 11	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding protein folding chaperone cation binding metal ion binding protein binding protein-folding chaperone binding	-	-
A	ATP-dependent Clp protease proteolytic subunit	peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity catalytic activity endopeptidase activity ATP-dependent peptidase activity ATP-dependent activity ATPase binding protein binding binding enzyme binding	proteolysis metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process catabolic process protein catabolic process protein quality control for misfolded or incompletely synthesized proteins macromolecule catabolic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure plastid organelle cytoplasm intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
O	IPR004176	Clp, repeat (R) N-terminal domain	Domain
O	IPR036628	Clp, N-terminal domain superfamily	Homologous Superfamily
N	IPR029045	ClpP/crotonase-like domain superfamily	Homologous Superfamily
N	IPR001907	ATP-dependent Clp protease proteolytic subunit	Family
N	IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	Family
L	IPR029045	ClpP/crotonase-like domain superfamily	Homologous Superfamily
L	IPR001907	ATP-dependent Clp protease proteolytic subunit	Family
L	IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	Family
K	IPR029045	ClpP/crotonase-like domain superfamily	Homologous Superfamily
K	IPR001907	ATP-dependent Clp protease proteolytic subunit	Family
K	IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	Family
I	IPR029045	ClpP/crotonase-like domain superfamily	Homologous Superfamily
I	IPR001907	ATP-dependent Clp protease proteolytic subunit	Family
I	IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	Family
H, J, M	IPR029045	ClpP/crotonase-like domain superfamily	Homologous Superfamily
H, J, M	IPR001907	ATP-dependent Clp protease proteolytic subunit	Family
H, J, M	IPR018215	ClpP, Ser active site	Active Site
H, J, M	IPR033135	ClpP, histidine active site	Active Site
H, J, M	IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	Family
C, E, G	IPR029045	ClpP/crotonase-like domain superfamily	Homologous Superfamily
C, E, G	IPR001907	ATP-dependent Clp protease proteolytic subunit	Family
C, E, G	IPR018215	ClpP, Ser active site	Active Site
C, E, G	IPR033135	ClpP, histidine active site	Active Site
C, E, G	IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	Family
B, D, F	IPR029045	ClpP/crotonase-like domain superfamily	Homologous Superfamily
B, D, F	IPR001907	ATP-dependent Clp protease proteolytic subunit	Family
B, D, F	IPR018215	ClpP, Ser active site	Active Site
B, D, F	IPR033135	ClpP, histidine active site	Active Site
B, D, F	IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	Family
R, S	IPR018369	Chaperonin GroES, conserved site	Conserved Site
R, S	IPR011032	GroES-like superfamily	Homologous Superfamily
R, S	IPR020818	GroES chaperonin family	Family
R, S	IPR037124	GroES chaperonin superfamily	Homologous Superfamily
Q	IPR018369	Chaperonin GroES, conserved site	Conserved Site
Q	IPR011032	GroES-like superfamily	Homologous Superfamily
Q	IPR020818	GroES chaperonin family	Family
Q	IPR037124	GroES chaperonin superfamily	Homologous Superfamily
P	IPR018369	Chaperonin GroES, conserved site	Conserved Site
P	IPR011032	GroES-like superfamily	Homologous Superfamily
P	IPR020818	GroES chaperonin family	Family
P	IPR037124	GroES chaperonin superfamily	Homologous Superfamily
A	IPR029045	ClpP/crotonase-like domain superfamily	Homologous Superfamily
A	IPR001907	ATP-dependent Clp protease proteolytic subunit	Family
A	IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	Family