7E6G

Crystal structure of diguanylate cyclase SiaD in complex with its activator SiaC from Pseudomonas aeruginosa


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
FPF09345e7e6gF1 A: a/b three-layered sandwichesX: SpoIIaa-like (From Topology)H: SpoIIaa-like (From Topology)T: SpoIIaa-likeF: PF09345ECOD (1.6)
CPF09345e7e6gC1 A: a/b three-layered sandwichesX: SpoIIaa-like (From Topology)H: SpoIIaa-like (From Topology)T: SpoIIaa-likeF: PF09345ECOD (1.6)
DPF09345e7e6gD1 A: a/b three-layered sandwichesX: SpoIIaa-like (From Topology)H: SpoIIaa-like (From Topology)T: SpoIIaa-likeF: PF09345ECOD (1.6)
EPF09345e7e6gE1 A: a/b three-layered sandwichesX: SpoIIaa-like (From Topology)H: SpoIIaa-like (From Topology)T: SpoIIaa-likeF: PF09345ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
C, D, E, F
PF09345SiaC family regulatory phosphoprotein (SiaC)SiaC family regulatory phosphoproteinThis entry represents the SiaC family regulatory phosphoprotein which undergoes a regulatory phosphorylation at Thr-68 of founder protein PA0170 from Pseudomonas aeruginosa, but in more distant homologs, T can be S. Also, it is part of motif NTSS, so ...This entry represents the SiaC family regulatory phosphoprotein which undergoes a regulatory phosphorylation at Thr-68 of founder protein PA0170 from Pseudomonas aeruginosa, but in more distant homologs, T can be S. Also, it is part of motif NTSS, so may contain more than one phosphorylation site. Phosphorylation causes regulatory change to protein-protein interaction, in a pathway that seems broadly distributed, involves a diguanylate cyclase, and in the case of Pseudomonas aeruginosa affects aggregation and biofilm formation responses.
Domain
A, B
PF00990Diguanylate cyclase, GGDEF domain (GGDEF)Diguanylate cyclase, GGDEF domainThis domain is found linked to a wide range of non-homologous domains in a variety of bacteria. It has been shown to be homologous to the adenylyl cyclase catalytic domain [1] and has diguanylate cyclase activity [4]. This observation correlates with ...This domain is found linked to a wide range of non-homologous domains in a variety of bacteria. It has been shown to be homologous to the adenylyl cyclase catalytic domain [1] and has diguanylate cyclase activity [4]. This observation correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. In the WspR protein of Pseudomonas aeruginosa, the GGDEF domain acts as a diguanylate cyclase, PDB:3bre, when the whole molecule appears to form a tetramer consisting of two symmetrically-related dimers representing a biological unit. The active site is the GGD/EF motif, buried in the structure, and the cyclic dimeric guanosine monophosphate (c-di-GMP) bind to the inhibitory-motif RxxD on the surface. The enzyme thus catalyses the cyclisation of two guanosine triphosphate (GTP) molecules to one c-di-GMP molecule [6,7,8].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
C, D, E, F
DUF1987 domain-containing protein- - -
A, B
Putative GGDEF domain protein

InterPro: Protein Family Classification InterPro Database Homepage