Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
J [auth l]d7dxal_ Membrane and cell surface proteins and peptides Single transmembrane helix Photosystem II reaction center protein L, PsbL PsbL-like Photosystem II reaction center protein L, PsbL (Thermostichus vulcanus ) [TaxId: 32053 ], SCOPe (2.08)
K [auth m]d7dxam_ Membrane and cell surface proteins and peptides Single transmembrane helix Photosystem II reaction center protein M, PsbM PsbM-like automated matches (Thermostichus vulcanus ) [TaxId: 32053 ], SCOPe (2.08)
L [auth t]d7dxat_ Membrane and cell surface proteins and peptides Single transmembrane helix Photosystem II reaction center protein T, PsbT PsbT-like Photosystem II reaction center protein T, PsbT (Thermostichus vulcanus ) [TaxId: 32053 ], SCOPe (2.08)
M [auth x]d7dxax_ Membrane and cell surface proteins and peptides Single transmembrane helix Photosystem II reaction center protein X, PsbX PsbX-like automated matches (Thermostichus vulcanus ) [TaxId: 32053 ], SCOPe (2.08)
C [auth a]d7dxaa_ Membrane and cell surface proteins and peptides Bacterial photosystem II reaction centre, L and M subunits Bacterial photosystem II reaction centre, L and M subunits Bacterial photosystem II reaction centre, L and M subunits automated matches (Thermostichus vulcanus ) [TaxId: 32053 ], SCOPe (2.08)
D [auth b]d7dxab_ Membrane and cell surface proteins and peptides Photosystem II antenna protein-like Photosystem II antenna protein-like Photosystem II antenna protein-like automated matches (Thermostichus vulcanus ) [TaxId: 32053 ], SCOPe (2.08)
E [auth d]d7dxad_ Membrane and cell surface proteins and peptides Bacterial photosystem II reaction centre, L and M subunits Bacterial photosystem II reaction centre, L and M subunits Bacterial photosystem II reaction centre, L and M subunits automated matches (Thermostichus vulcanus ) [TaxId: 32053 ], SCOPe (2.08)
F [auth e]d7dxae_ Membrane and cell surface proteins and peptides Single transmembrane helix Cytochrome b559 subunits Cytochrome b559 subunits automated matches (Thermostichus vulcanus ) [TaxId: 32053 ], SCOPe (2.08)
G [auth f]d7dxaf_ Membrane and cell surface proteins and peptides Single transmembrane helix Cytochrome b559 subunits Cytochrome b559 subunits automated matches (Thermostichus vulcanus ) [TaxId: 32053 ], SCOPe (2.08)
H [auth h]d7dxah_ Membrane and cell surface proteins and peptides Single transmembrane helix Photosystem II 10 kDa phosphoprotein PsbH PsbH-like Photosystem II reaction center protein H, PsbH (Thermostichus vulcanus ) [TaxId: 32053 ], SCOPe (2.08)
I [auth i]d7dxai_ Membrane and cell surface proteins and peptides Single transmembrane helix Photosystem II reaction center protein I, PsbI PsbI-like Photosystem II reaction center protein I, PsbI (Thermostichus vulcanus ) [TaxId: 32053 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyPsb28-like 8056979 3002372 SCOP2B (2022-06-29)
J [auth l]SCOP2B SuperfamilyPhotosystem II reaction center protein L, PsbL 8093612 3001523 SCOP2B (2022-06-29)
L [auth t]SCOP2B SuperfamilyPhotosystem II reaction center protein T, PsbT 8101519 3001561 SCOP2B (2022-06-29)
D [auth b]SCOP2B SuperfamilyPhotosystem II antenna protein-like 8097548 3001674 SCOP2B (2022-06-29)
E [auth d]SCOP2B SuperfamilyBacterial photosystem II reaction centre, L and M subunits 8097554 3000736 SCOP2B (2022-06-29)
H [auth h]SCOP2B SuperfamilyPhotosystem II 10 kDa phosphoprotein PsbH 8098552 3001547 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APsb28e7dxaA1 A: beta barrelsX: cradle loop barrelH: Photosystem II accessory factor Psb28 (From Topology)T: Photosystem II accessory factor Psb28F: Psb28ECOD (1.6)
J [auth l]PsbLe7dxal1 A: extended segmentsX: Photosystem II reaction center protein L, PsbL (From Topology)H: Photosystem II reaction center protein L, PsbL (From Topology)T: Photosystem II reaction center protein L, PsbLF: PsbLECOD (1.6)
K [auth m]PsbMe7dxam1 A: extended segmentsX: Photosystem II reaction center protein M, PsbM (From Topology)H: Photosystem II reaction center protein M, PsbM (From Topology)T: Photosystem II reaction center protein M, PsbMF: PsbMECOD (1.6)
L [auth t]PsbTe7dxat1 A: extended segmentsX: Photosystem II reaction center protein T, PsbT (From Topology)H: Photosystem II reaction center protein T, PsbT (From Topology)T: Photosystem II reaction center protein T, PsbTF: PsbTECOD (1.6)
M [auth x]PsbXe7dxax1 A: extended segmentsX: Photosystem II PsbX protein (From Topology)H: Photosystem II PsbX protein (From Topology)T: Photosystem II PsbX proteinF: PsbXECOD (1.6)
C [auth a]Photo_RCe7dxaa1 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: Photo_RCECOD (1.6)
D [auth b]PSII_1ste7dxab2 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PSII_1stECOD (1.6)
D [auth b]PSII_2nde7dxab1 A: a+b two layersX: Photosystem II antenna protein PsbB insertion domain (From Topology)H: Photosystem II antenna protein PsbB insertion domain (From Topology)T: Photosystem II antenna protein PsbB insertion domainF: PSII_2ndECOD (1.6)
E [auth d]Photo_RCe7dxad1 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: Photo_RCECOD (1.6)
F [auth e]Cytochrom_B559ae7dxae1 A: extended segmentsX: Cytochrome b559 subunits (From Topology)H: Cytochrome b559 subunits (From Topology)T: Cytochrome b559 subunitsF: Cytochrom_B559aECOD (1.6)
G [auth f]Cytochrom_B559e7dxaf1 A: extended segmentsX: Cytochrome b559 subunits (From Topology)H: Cytochrome b559 subunits (From Topology)T: Cytochrome b559 subunitsF: Cytochrom_B559ECOD (1.6)
H [auth h]PsbHe7dxah1 A: extended segmentsX: Photosystem II 10 kDa phosphoprotein PsbH (From Topology)H: Photosystem II 10 kDa phosphoprotein PsbH (From Topology)T: Photosystem II 10 kDa phosphoprotein PsbHF: PsbHECOD (1.6)
I [auth i]PsbIe7dxai1 A: extended segmentsX: Photosystem II reaction center protein I, PsbI (From Topology)H: Photosystem II reaction center protein I, PsbI (From Topology)T: Photosystem II reaction center protein I, PsbIF: PsbIECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF03912Psb28 protein (Psb28)Psb28 protein- Family
PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family
PF00421Photosystem II protein (PSII)Photosystem II protein- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Photosystem II reaction center Psb28 protein-
J [auth l]Photosystem II reaction center protein L-
K [auth m]Photosystem II reaction center protein M-
L [auth t]Photosystem II reaction center protein T-
M [auth x]Photosystem II reaction center protein X-
N [auth C]unidentified transmembrane protein---
Tsl0063 protein-
C [auth a]Photosystem II protein D1
D [auth b]Photosystem II CP47 reaction center protein
E [auth d]Photosystem II D2 protein
F [auth e]Cytochrome b559 subunit alpha
G [auth f]Cytochrome b559 subunit beta
H [auth h]Photosystem II reaction center protein H
I [auth i]Photosystem II reaction center protein I-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR005610Photosystem II Psb28, class 1Family
IPR038676Photosystem II Psb28, class 1 superfamilyHomologous Superfamily
J [auth l]IPR003372Photosystem II PsbLFamily
J [auth l]IPR037266Photosystem II PsbL superfamilyHomologous Superfamily
K [auth m]IPR007826Photosystem II PsbMFamily
K [auth m]IPR037269Photosystem II PsbM superfamilyHomologous Superfamily
L [auth t]IPR001743Photosystem II PsbTFamily
L [auth t]IPR037268Photosystem II PsbT superfamilyHomologous Superfamily
M [auth x]IPR009518Photosystem II PsbXFamily
M [auth x]IPR023431Photosystem II PsbX, type 1 subfamilyFamily
IPR048028Photosystem II assembly protein Psb34-likeFamily
C [auth a]IPR005867Photosystem II protein D1Family
C [auth a]IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
C [auth a]IPR000484Photosynthetic reaction centre, L/MFamily
D [auth b]IPR036001Photosystem antenna protein-like superfamilyHomologous Superfamily
D [auth b]IPR000932Photosystem antenna protein-likeFamily
D [auth b]IPR017486Photosystem II CP47 reaction centre proteinFamily
E [auth d]IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
E [auth d]IPR000484Photosynthetic reaction centre, L/MFamily
E [auth d]IPR005868Photosystem II D2 proteinFamily
F [auth e]IPR013081Photosystem II cytochrome b559, N-terminalDomain
F [auth e]IPR006217Photosystem II cytochrome b559, alpha subunitFamily
F [auth e]IPR013082Photosystem II cytochrome b559, alpha subunit, lumenal regionDomain
F [auth e]IPR037025Photosystem II cytochrome b559, alpha subunit superfamilyHomologous Superfamily
F [auth e]IPR006216Photosystem II cytochrome b559, conserved siteConserved Site
G [auth f]IPR006241Photosystem II cytochrome b559, beta subunitFamily
G [auth f]IPR013081Photosystem II cytochrome b559, N-terminalDomain
G [auth f]IPR006216Photosystem II cytochrome b559, conserved siteConserved Site
H [auth h]IPR036863Photosystem II reaction centre protein H superfamilyHomologous Superfamily
H [auth h]IPR001056Photosystem II reaction centre protein HFamily
I [auth i]IPR037271Photosystem II PsbI superfamilyHomologous Superfamily
I [auth i]IPR003686Photosystem II PsbIFamily