7DNN | pdb_00007dnn

Crystal structure of the AgCarB2-C2 complex with homoorientin

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C [auth P]	Glyco_transf_41	e7dnnP1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Glyco_transf_41	ECOD (v294.1)
A	Glyco_transf_41	e7dnnA1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Glyco_transf_41	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B, D [auth Q]	PF19906	C-glycoside deglycosidase beta subunit (CGDB)	C-glycoside deglycosidase beta subunit	This is the structural domain of C-glycoside deglycosidase beta subunit (CGDB, also known as CarC), a carbon-carbon bond-cleaving enzyme which participates in the metabolism of C-glycosides [1]. It acts on the C6-glycosylated compounds 3''-dehydroiso ...	This is the structural domain of C-glycoside deglycosidase beta subunit (CGDB, also known as CarC), a carbon-carbon bond-cleaving enzyme which participates in the metabolism of C-glycosides [1]. It acts on the C6-glycosylated compounds 3''-dehydroisovitexin (3''-oxo-isovitexin) and 3''-dehydroisoorientin (3''-oxo-homoorientin) [1]. In some members, this domain is found in combination with other domains.	Domain
A, C [auth P]	PF01261	Xylose isomerase-like TIM barrel (AP_endonuc_2)	Xylose isomerase-like TIM barrel	This TIM alpha/beta barrel structure is found in xylose isomerase (Swiss:P19148) and in endonuclease IV (Swiss:P12638, EC:3.1.21.2). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the ...	This TIM alpha/beta barrel structure is found in xylose isomerase (Swiss:P19148) and in endonuclease IV (Swiss:P12638, EC:3.1.21.2). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B, D [auth Q]	AgCarC2	lyase activity catalytic activity	-	-
A, C [auth P]	AP_endonuc_2 domain-containing protein	lyase activity catalytic activity cation binding ion binding binding metal ion binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, D [auth Q]	IPR045959	C-glycoside deglycosidase beta subunit	Domain
A, C [auth P]	IPR013022	Xylose isomerase-like, TIM barrel domain	Domain
A, C [auth P]	IPR036237	Xylose isomerase-like superfamily	Homologous Superfamily
A, C [auth P]	IPR050312	IolE/XylA/MocC-like	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.