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Structure of plant photosystem I-light harvesting complex I supercomplex


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
A [auth 1]d7dkz1_ Membrane and cell surface proteins and peptides Chlorophyll a-b binding protein Chlorophyll a-b binding protein automated matches automated matches (Lathyrus oleraceus ) [TaxId: 3888 ], SCOPe (2.08)
G [auth C]d7dkzc_ Alpha and beta proteins (a+b) Ferredoxin-like 4Fe-4S ferredoxins 7-Fe ferredoxin automated matches Garden pea (Lathyrus oleraceus ) [TaxId: 3888 ], SCOPe (2.08)
H [auth D]d7dkzd_ Alpha and beta proteins (a+b) Photosystem I subunit PsaD Photosystem I subunit PsaD Photosystem I subunit PsaD automated matches (Lathyrus oleraceus ) [TaxId: 3888 ], SCOPe (2.08)
I [auth E]d7dkze1 All beta proteins SH3-like barrel Electron transport accessory proteins automated matches automated matches Garden pea (Lathyrus oleraceus ) [TaxId: 3888 ], SCOPe (2.08)
I [auth E]d7dkze2 Artifacts Tags Tags Tags C-terminal Tags Garden pea (Lathyrus oleraceus ) [TaxId: 3888 ], SCOPe (2.08)
N [auth J]d7dkzj_ Membrane and cell surface proteins and peptides Single transmembrane helix Subunit IX of photosystem I reaction centre, PsaJ automated matches automated matches Garden pea (Lathyrus oleraceus ) [TaxId: 3888 ], SCOPe (2.08)
O [auth L]d7dkzl_ Membrane and cell surface proteins and peptides Photosystem I reaction center subunit XI, PsaL Photosystem I reaction center subunit XI, PsaL automated matches automated matches (Lathyrus oleraceus ) [TaxId: 3888 ], SCOPe (2.08)
F [auth B]d7dkzb_ Membrane and cell surface proteins and peptides Photosystem I subunits PsaA/PsaB Photosystem I subunits PsaA/PsaB Photosystem I subunits PsaA/PsaB automated matches Garden pea (Lathyrus oleraceus ) [TaxId: 3888 ], SCOPe (2.08)
E [auth A]d7dkza_ Membrane and cell surface proteins and peptides Photosystem I subunits PsaA/PsaB Photosystem I subunits PsaA/PsaB Photosystem I subunits PsaA/PsaB automated matches Garden pea (Lathyrus oleraceus ) [TaxId: 3888 ], SCOPe (2.08)
D [auth 4]d7dkz4_ Membrane and cell surface proteins and peptides Chlorophyll a-b binding protein Chlorophyll a-b binding protein automated matches automated matches Garden pea (Lathyrus oleraceus ) [TaxId: 3888 ], SCOPe (2.08)
C [auth 3]d7dkz3_ Membrane and cell surface proteins and peptides Chlorophyll a-b binding protein Chlorophyll a-b binding protein automated matches automated matches Garden pea (Lathyrus oleraceus ) [TaxId: 3888 ], SCOPe (2.08)
B [auth 2]d7dkz2_ Membrane and cell surface proteins and peptides Chlorophyll a-b binding protein Chlorophyll a-b binding protein automated matches automated matches Garden pea (Lathyrus oleraceus ) [TaxId: 3888 ], SCOPe (2.08)
J [auth F]d7dkzf_ Membrane and cell surface proteins and peptides Single transmembrane helix Subunit III of photosystem I reaction centre, PsaF automated matches automated matches Garden pea (Lathyrus oleraceus ) [TaxId: 3888 ], SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth 1]Sod_Fe_Ce7dkz11 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Sod_Fe_CECOD (v295.2)
G [auth C]Sod_Fe_Ce7dkzC1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Sod_Fe_CECOD (v295.2)
H [auth D]Sod_Fe_Ce7dkzD1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Sod_Fe_CECOD (v295.2)
I [auth E]Sod_Fe_Ce7dkzE1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Sod_Fe_CECOD (v295.2)
K [auth G]Sod_Fe_Ce7dkzG1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Sod_Fe_CECOD (v295.2)
L [auth H]Sod_Fe_Ce7dkzH1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Sod_Fe_CECOD (v295.2)
N [auth J]Sod_Fe_Ce7dkzJ1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Sod_Fe_CECOD (v295.2)
O [auth L]Sod_Fe_Ce7dkzL1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Sod_Fe_CECOD (v295.2)
P [auth K]Sod_Fe_Ce7dkzK1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Sod_Fe_CECOD (v295.2)
F [auth B]Sod_Fe_Ce7dkzB1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Sod_Fe_CECOD (v295.2)
E [auth A]Sod_Fe_Ce7dkzA1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Sod_Fe_CECOD (v295.2)
D [auth 4]Sod_Fe_Ce7dkz41 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Sod_Fe_CECOD (v295.2)
C [auth 3]Sod_Fe_Ce7dkz31 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Sod_Fe_CECOD (v295.2)
B [auth 2]Sod_Fe_Ce7dkz21 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Sod_Fe_CECOD (v295.2)
M [auth I]Sod_Fe_Ce7dkzI1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Sod_Fe_CECOD (v295.2)
J [auth F]Sod_Fe_Ce7dkzF1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Sod_Fe_CECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 1]Lhca1---
G [auth C]Photosystem I iron-sulfur center
H [auth D]PsaD---
I [auth E]PsaE-
K [auth G]PsaG---
L [auth H]PsaH---
N [auth J]Photosystem I reaction center subunit IX-
O [auth L]PsaL---
P [auth K]PSI-K-
F [auth B]Photosystem I P700 chlorophyll a apoprotein A2
E [auth A]Photosystem I P700 chlorophyll a apoprotein A1
D [auth 4]Chlorophyll a-b binding protein P4, chloroplastic-
C [auth 3]Chlorophyll a-b binding protein 3, chloroplastic-
B [auth 2]Chlorophyll a-b binding protein, chloroplastic-
M [auth I]Photosystem I reaction center subunit VIII-
J [auth F]PSI-F-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
G [auth C]IPR0179004Fe-4S ferredoxin, iron-sulphur binding, conserved siteConserved Site
G [auth C]IPR050157Photosystem I iron-sulfur centerFamily
G [auth C]IPR0178964Fe-4S ferredoxin-type, iron-sulphur binding domainDomain
G [auth C]IPR017491Photosystem I protein PsaCFamily
I [auth E]IPR008990Electron transport accessory-like domain superfamilyHomologous Superfamily
I [auth E]IPR003375Photosystem I PsaE, reaction centre subunit IVFamily
N [auth J]IPR002615Photosystem I PsaJ, reaction centre subunit IXFamily
N [auth J]IPR036062Photosystem I PsaJ, reaction centre subunit IX superfamilyHomologous Superfamily
P [auth K]IPR023618Photosystem I PsaG/PsaK domain, chloroplasticHomologous Superfamily
P [auth K]IPR016370Photosystem I reaction center subunit V/PsaK, plantFamily
P [auth K]IPR000549Photosystem I reaction center subunit V/PsaKFamily
P [auth K]IPR035982Photosystem I reaction centre subunit PsaK superfamilyHomologous Superfamily
P [auth K]IPR017493Photosystem I reaction center subunit psaK, plantFamily
F [auth B]IPR036408Photosystem I PsaA/PsaB superfamilyHomologous Superfamily
F [auth B]IPR001280Photosystem I PsaA/PsaBFamily
F [auth B]IPR006244Photosystem I PsaBFamily
F [auth B]IPR020586Photosystem I PsaA/PsaB, conserved siteConserved Site
E [auth A]IPR006243Photosystem I PsaAFamily
E [auth A]IPR036408Photosystem I PsaA/PsaB superfamilyHomologous Superfamily
E [auth A]IPR001280Photosystem I PsaA/PsaBFamily
E [auth A]IPR020586Photosystem I PsaA/PsaB, conserved siteConserved Site
D [auth 4]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
D [auth 4]IPR022796Chlorophyll A-B binding proteinFamily
C [auth 3]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
C [auth 3]IPR022796Chlorophyll A-B binding proteinFamily
B [auth 2]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
B [auth 2]IPR022796Chlorophyll A-B binding proteinFamily
M [auth I]IPR036357Photosystem I reaction centre subunit VIII superfamilyHomologous Superfamily
M [auth I]IPR001302Photosystem I reaction centre subunit VIIIFamily
J [auth F]IPR036577Photosystem I PsaF, reaction centre subunit III superfamilyHomologous Superfamily
J [auth F]IPR003666Photosystem I PsaF, reaction centre subunit IIIFamily