7D98
Crystal structure of full-length CbnR complexed with the target DNA complex
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Type 2 solute binding protein-like | 8017746 | 3000083 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Winged helix DNA-binding domain | 8017744 | 3000034 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Winged helix DNA-binding domain | 8017744 | 3000034 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Type 2 solute binding protein-like | 8017746 | 3000083 | SCOP2B (2022-06-29) |
C [auth P] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8017744 | 3000034 | SCOP2B (2022-06-29) |
C [auth P] | SCOP2B Superfamily | Type 2 solute binding protein-like | 8017746 | 3000083 | SCOP2B (2022-06-29) |
D [auth Q] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8017744 | 3000034 | SCOP2B (2022-06-29) |
D [auth Q] | SCOP2B Superfamily | Type 2 solute binding protein-like | 8017746 | 3000083 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00126 | e7d98A1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF00126 | ECOD (1.6) |
A | PF03466 | e7d98A3 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: PF03466 | ECOD (1.6) |
B | PF00126 | e7d98B3 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF00126 | ECOD (1.6) |
B | PF03466 | e7d98B2 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: PF03466 | ECOD (1.6) |
C [auth P] | PF00126 | e7d98P3 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF00126 | ECOD (1.6) |
C [auth P] | PF03466 | e7d98P2 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: PF03466 | ECOD (1.6) |
D [auth Q] | PF00126 | e7d98Q1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF00126 | ECOD (1.6) |
D [auth Q] | PF03466 | e7d98Q3 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: PF03466 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, B, C [auth P], D [auth Q] | PF03466 | LysR substrate binding domain (LysR_substrate) | LysR substrate binding domain | - | Family |
A, B, C [auth P], D [auth Q] | PF00126 | Bacterial regulatory helix-turn-helix protein, lysR family (HTH_1) | Bacterial regulatory helix-turn-helix protein, lysR family | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
A, B, C [auth P], D [auth Q] | LysR-type regulatory protein | - | ||
E [auth G] | DNA (56-mer) | - | - | - |
F [auth H] | DNA (56-mer) | - | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, B, C [auth P], D [auth Q] | IPR005119 | LysR, substrate-binding | Domain |
A, B, C [auth P], D [auth Q] | IPR036388 | Winged helix-like DNA-binding domain superfamily | Homologous Superfamily |
A, B, C [auth P], D [auth Q] | IPR036390 | Winged helix DNA-binding domain superfamily | Homologous Superfamily |
A, B, C [auth P], D [auth Q] | IPR000847 | Transcription regulator HTH, LysR | Domain |