7D1A
cryo-EM structure of a group II intron RNP complexed with its reverse transcriptase
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth C] | Intron_maturas2 | e7d1aC2 | A: alpha bundles | X: helical bundle domain in reverse transcriptase-like polymerases (From Topology) | H: helical bundle domain in reverse transcriptase-like polymerases (From Topology) | T: helical bundle domain in reverse transcriptase-like polymerases | F: Intron_maturas2 | ECOD (1.6) |
A [auth C] | RVT_1 | e7d1aC1 | A: a+b two layers | X: Alpha-beta plaits | H: Adenylyl and guanylyl cyclase catalytic domain-like | T: Adenylyl and guanylyl cyclase catalytic domain-like | F: RVT_1 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth C] | PF01348 | Type II intron maturase (Intron_maturas2) | Type II intron maturase | - | Family |
A [auth C] | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) | Reverse transcriptase (RNA-dependent DNA polymerase) | A reverse transcriptase gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. Reverse transcriptases occur in a variety of mobile elements, including retrotransposons, retroviruses, group II introns, bacterial msDNAs ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth C] | IPR000477 | Reverse transcriptase domain | Domain |
A [auth C] | IPR051083 | Group II Intron Splicing and Mobility/Defense | Family |
A [auth C] | IPR024937 | Domain X | Domain |
A [auth C] | IPR043502 | DNA/RNA polymerase superfamily | Homologous Superfamily |
A [auth C] | IPR049030 | AI2M/AI1M-like, HNH endonuclease domain | Domain |