7CW2
Cryo-EM structure of Chikungunya virus in complex with Fab fragments of mAb CHK-263 (subregion around icosahedral 5-fold vertex)
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
EA [auth R] | SCOP2B Superfamily | Trypsin-like serine proteases | 8101317 | 3000114 | SCOP2B (2022-06-29) |
KA [auth o] | SCOP2B Superfamily | Trypsin-like serine proteases | 8101317 | 3000114 | SCOP2B (2022-06-29) |
BA [auth O] | SCOP2B Superfamily | Trypsin-like serine proteases | 8101317 | 3000114 | SCOP2B (2022-06-29) |
G [auth I] | SCOP2B Superfamily | Trypsin-like serine proteases | 8101317 | 3000114 | SCOP2B (2022-06-29) |
H [auth C] | SCOP2B Superfamily | Trypsin-like serine proteases | 8101317 | 3000114 | SCOP2B (2022-06-29) |
HA [auth l] | SCOP2B Superfamily | Trypsin-like serine proteases | 8101317 | 3000114 | SCOP2B (2022-06-29) |
I [auth F] | SCOP2B Superfamily | Trypsin-like serine proteases | 8101317 | 3000114 | SCOP2B (2022-06-29) |
NA [auth r] | SCOP2B Superfamily | Trypsin-like serine proteases | 8101317 | 3000114 | SCOP2B (2022-06-29) |
QA [auth u] | SCOP2B Superfamily | Trypsin-like serine proteases | 8101317 | 3000114 | SCOP2B (2022-06-29) |
R [auth i] | SCOP2B Superfamily | Trypsin-like serine proteases | 8101317 | 3000114 | SCOP2B (2022-06-29) |
S [auth c] | SCOP2B Superfamily | Trypsin-like serine proteases | 8101317 | 3000114 | SCOP2B (2022-06-29) |
T [auth f] | SCOP2B Superfamily | Trypsin-like serine proteases | 8101317 | 3000114 | SCOP2B (2022-06-29) |
TA [auth x] | SCOP2B Superfamily | Trypsin-like serine proteases | 8101317 | 3000114 | SCOP2B (2022-06-29) |
WA [auth S] | SCOP2B Superfamily | Trypsin-like serine proteases | 8101317 | 3000114 | SCOP2B (2022-06-29) |
Y [auth L] | SCOP2B Superfamily | Trypsin-like serine proteases | 8101317 | 3000114 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
CA [auth P] | Alpha_E1_glycop_2nd | e7cw2P1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Alpha_E1_glycop_2nd | ECOD (1.6) |
CA [auth P] | Alpha_E1_glycop_1st | e7cw2P2 | A: beta complex topology | X: Viral glycoprotein, central and dimerisation domains-like | H: Viral glycoprotein, central and dimerisation domains (From Topology) | T: Viral glycoprotein, central and dimerisation domains | F: Alpha_E1_glycop_1st | ECOD (1.6) |
CA [auth P] | Alpha_E1_glycop_like | e7cw2P3 | A: extended segments | X: Transmembrane helix of E1 envelope glycoprotein (From Topology) | H: Transmembrane helix of E1 envelope glycoprotein (From Topology) | T: Transmembrane helix of E1 envelope glycoprotein | F: Alpha_E1_glycop_like | ECOD (1.6) |
A [auth G] | Alpha_E1_glycop_2nd | e7cw2G1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Alpha_E1_glycop_2nd | ECOD (1.6) |
A [auth G] | Alpha_E1_glycop_1st | e7cw2G2 | A: beta complex topology | X: Viral glycoprotein, central and dimerisation domains-like | H: Viral glycoprotein, central and dimerisation domains (From Topology) | T: Viral glycoprotein, central and dimerisation domains | F: Alpha_E1_glycop_1st | ECOD (1.6) |
A [auth G] | Alpha_E1_glycop_like | e7cw2G3 | A: extended segments | X: Transmembrane helix of E1 envelope glycoprotein (From Topology) | H: Transmembrane helix of E1 envelope glycoprotein (From Topology) | T: Transmembrane helix of E1 envelope glycoprotein | F: Alpha_E1_glycop_like | ECOD (1.6) |
C [auth A] | Alpha_E1_glycop_2nd | e7cw2A2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Alpha_E1_glycop_2nd | ECOD (1.6) |
C [auth A] | Alpha_E1_glycop_1st | e7cw2A3 | A: beta complex topology | X: Viral glycoprotein, central and dimerisation domains-like | H: Viral glycoprotein, central and dimerisation domains (From Topology) | T: Viral glycoprotein, central and dimerisation domains | F: Alpha_E1_glycop_1st | ECOD (1.6) |
C [auth A] | Alpha_E1_glycop_like | e7cw2A1 | A: extended segments | X: Transmembrane helix of E1 envelope glycoprotein (From Topology) | H: Transmembrane helix of E1 envelope glycoprotein (From Topology) | T: Transmembrane helix of E1 envelope glycoprotein | F: Alpha_E1_glycop_like | ECOD (1.6) |
E [auth D] | Alpha_E1_glycop_2nd | e7cw2D1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Alpha_E1_glycop_2nd | ECOD (1.6) |
E [auth D] | Alpha_E1_glycop_1st | e7cw2D2 | A: beta complex topology | X: Viral glycoprotein, central and dimerisation domains-like | H: Viral glycoprotein, central and dimerisation domains (From Topology) | T: Viral glycoprotein, central and dimerisation domains | F: Alpha_E1_glycop_1st | ECOD (1.6) |
E [auth D] | Alpha_E1_glycop_like | e7cw2D3 | A: extended segments | X: Transmembrane helix of E1 envelope glycoprotein (From Topology) | H: Transmembrane helix of E1 envelope glycoprotein (From Topology) | T: Transmembrane helix of E1 envelope glycoprotein | F: Alpha_E1_glycop_like | ECOD (1.6) |
FA [auth j] | Alpha_E1_glycop_2nd | e7cw2j2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Alpha_E1_glycop_2nd | ECOD (1.6) |
FA [auth j] | Alpha_E1_glycop_1st | e7cw2j3 | A: beta complex topology | X: Viral glycoprotein, central and dimerisation domains-like | H: Viral glycoprotein, central and dimerisation domains (From Topology) | T: Viral glycoprotein, central and dimerisation domains | F: Alpha_E1_glycop_1st | ECOD (1.6) |
FA [auth j] | Alpha_E1_glycop_like | e7cw2j1 | A: extended segments | X: Transmembrane helix of E1 envelope glycoprotein (From Topology) | H: Transmembrane helix of E1 envelope glycoprotein (From Topology) | T: Transmembrane helix of E1 envelope glycoprotein | F: Alpha_E1_glycop_like | ECOD (1.6) |
IA [auth m] | Alpha_E1_glycop_2nd | e7cw2m2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Alpha_E1_glycop_2nd | ECOD (1.6) |
IA [auth m] | Alpha_E1_glycop_1st | e7cw2m1 | A: beta complex topology | X: Viral glycoprotein, central and dimerisation domains-like | H: Viral glycoprotein, central and dimerisation domains (From Topology) | T: Viral glycoprotein, central and dimerisation domains | F: Alpha_E1_glycop_1st | ECOD (1.6) |
IA [auth m] | Alpha_E1_glycop_like | e7cw2m3 | A: extended segments | X: Transmembrane helix of E1 envelope glycoprotein (From Topology) | H: Transmembrane helix of E1 envelope glycoprotein (From Topology) | T: Transmembrane helix of E1 envelope glycoprotein | F: Alpha_E1_glycop_like | ECOD (1.6) |
L [auth g] | Alpha_E1_glycop_2nd | e7cw2g1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Alpha_E1_glycop_2nd | ECOD (1.6) |
L [auth g] | Alpha_E1_glycop_1st | e7cw2g3 | A: beta complex topology | X: Viral glycoprotein, central and dimerisation domains-like | H: Viral glycoprotein, central and dimerisation domains (From Topology) | T: Viral glycoprotein, central and dimerisation domains | F: Alpha_E1_glycop_1st | ECOD (1.6) |
L [auth g] | Alpha_E1_glycop_like | e7cw2g2 | A: extended segments | X: Transmembrane helix of E1 envelope glycoprotein (From Topology) | H: Transmembrane helix of E1 envelope glycoprotein (From Topology) | T: Transmembrane helix of E1 envelope glycoprotein | F: Alpha_E1_glycop_like | ECOD (1.6) |
LA [auth p] | Alpha_E1_glycop_2nd | e7cw2p3 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Alpha_E1_glycop_2nd | ECOD (1.6) |
LA [auth p] | Alpha_E1_glycop_1st | e7cw2p1 | A: beta complex topology | X: Viral glycoprotein, central and dimerisation domains-like | H: Viral glycoprotein, central and dimerisation domains (From Topology) | T: Viral glycoprotein, central and dimerisation domains | F: Alpha_E1_glycop_1st | ECOD (1.6) |
LA [auth p] | Alpha_E1_glycop_like | e7cw2p2 | A: extended segments | X: Transmembrane helix of E1 envelope glycoprotein (From Topology) | H: Transmembrane helix of E1 envelope glycoprotein (From Topology) | T: Transmembrane helix of E1 envelope glycoprotein | F: Alpha_E1_glycop_like | ECOD (1.6) |
N [auth a] | Alpha_E1_glycop_2nd | e7cw2a1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Alpha_E1_glycop_2nd | ECOD (1.6) |
N [auth a] | Alpha_E1_glycop_1st | e7cw2a3 | A: beta complex topology | X: Viral glycoprotein, central and dimerisation domains-like | H: Viral glycoprotein, central and dimerisation domains (From Topology) | T: Viral glycoprotein, central and dimerisation domains | F: Alpha_E1_glycop_1st | ECOD (1.6) |
N [auth a] | Alpha_E1_glycop_like | e7cw2a2 | A: extended segments | X: Transmembrane helix of E1 envelope glycoprotein (From Topology) | H: Transmembrane helix of E1 envelope glycoprotein (From Topology) | T: Transmembrane helix of E1 envelope glycoprotein | F: Alpha_E1_glycop_like | ECOD (1.6) |
OA [auth s] | Alpha_E1_glycop_2nd | e7cw2s2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Alpha_E1_glycop_2nd | ECOD (1.6) |
OA [auth s] | Alpha_E1_glycop_1st | e7cw2s3 | A: beta complex topology | X: Viral glycoprotein, central and dimerisation domains-like | H: Viral glycoprotein, central and dimerisation domains (From Topology) | T: Viral glycoprotein, central and dimerisation domains | F: Alpha_E1_glycop_1st | ECOD (1.6) |
OA [auth s] | Alpha_E1_glycop_like | e7cw2s1 | A: extended segments | X: Transmembrane helix of E1 envelope glycoprotein (From Topology) | H: Transmembrane helix of E1 envelope glycoprotein (From Topology) | T: Transmembrane helix of E1 envelope glycoprotein | F: Alpha_E1_glycop_like | ECOD (1.6) |
P [auth d] | Alpha_E1_glycop_2nd | e7cw2d3 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Alpha_E1_glycop_2nd | ECOD (1.6) |
P [auth d] | Alpha_E1_glycop_1st | e7cw2d2 | A: beta complex topology | X: Viral glycoprotein, central and dimerisation domains-like | H: Viral glycoprotein, central and dimerisation domains (From Topology) | T: Viral glycoprotein, central and dimerisation domains | F: Alpha_E1_glycop_1st | ECOD (1.6) |
P [auth d] | Alpha_E1_glycop_like | e7cw2d1 | A: extended segments | X: Transmembrane helix of E1 envelope glycoprotein (From Topology) | H: Transmembrane helix of E1 envelope glycoprotein (From Topology) | T: Transmembrane helix of E1 envelope glycoprotein | F: Alpha_E1_glycop_like | ECOD (1.6) |
RA [auth v] | Alpha_E1_glycop_2nd | e7cw2v1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Alpha_E1_glycop_2nd | ECOD (1.6) |
RA [auth v] | Alpha_E1_glycop_1st | e7cw2v2 | A: beta complex topology | X: Viral glycoprotein, central and dimerisation domains-like | H: Viral glycoprotein, central and dimerisation domains (From Topology) | T: Viral glycoprotein, central and dimerisation domains | F: Alpha_E1_glycop_1st | ECOD (1.6) |
RA [auth v] | Alpha_E1_glycop_like | e7cw2v3 | A: extended segments | X: Transmembrane helix of E1 envelope glycoprotein (From Topology) | H: Transmembrane helix of E1 envelope glycoprotein (From Topology) | T: Transmembrane helix of E1 envelope glycoprotein | F: Alpha_E1_glycop_like | ECOD (1.6) |
UA [auth y] | Alpha_E1_glycop_2nd | e7cw2y1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Alpha_E1_glycop_2nd | ECOD (1.6) |
UA [auth y] | Alpha_E1_glycop_1st | e7cw2y3 | A: beta complex topology | X: Viral glycoprotein, central and dimerisation domains-like | H: Viral glycoprotein, central and dimerisation domains (From Topology) | T: Viral glycoprotein, central and dimerisation domains | F: Alpha_E1_glycop_1st | ECOD (1.6) |
UA [auth y] | Alpha_E1_glycop_like | e7cw2y2 | A: extended segments | X: Transmembrane helix of E1 envelope glycoprotein (From Topology) | H: Transmembrane helix of E1 envelope glycoprotein (From Topology) | T: Transmembrane helix of E1 envelope glycoprotein | F: Alpha_E1_glycop_like | ECOD (1.6) |
W [auth J] | Alpha_E1_glycop_2nd | e7cw2J1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Alpha_E1_glycop_2nd | ECOD (1.6) |
W [auth J] | Alpha_E1_glycop_1st | e7cw2J2 | A: beta complex topology | X: Viral glycoprotein, central and dimerisation domains-like | H: Viral glycoprotein, central and dimerisation domains (From Topology) | T: Viral glycoprotein, central and dimerisation domains | F: Alpha_E1_glycop_1st | ECOD (1.6) |
W [auth J] | Alpha_E1_glycop_like | e7cw2J3 | A: extended segments | X: Transmembrane helix of E1 envelope glycoprotein (From Topology) | H: Transmembrane helix of E1 envelope glycoprotein (From Topology) | T: Transmembrane helix of E1 envelope glycoprotein | F: Alpha_E1_glycop_like | ECOD (1.6) |
Z [auth M] | Alpha_E1_glycop_2nd | e7cw2M3 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Alpha_E1_glycop_2nd | ECOD (1.6) |
Z [auth M] | Alpha_E1_glycop_1st | e7cw2M2 | A: beta complex topology | X: Viral glycoprotein, central and dimerisation domains-like | H: Viral glycoprotein, central and dimerisation domains (From Topology) | T: Viral glycoprotein, central and dimerisation domains | F: Alpha_E1_glycop_1st | ECOD (1.6) |
Z [auth M] | Alpha_E1_glycop_like | e7cw2M1 | A: extended segments | X: Transmembrane helix of E1 envelope glycoprotein (From Topology) | H: Transmembrane helix of E1 envelope glycoprotein (From Topology) | T: Transmembrane helix of E1 envelope glycoprotein | F: Alpha_E1_glycop_like | ECOD (1.6) |
EA [auth R] | Peptidase_S3 | e7cw2R1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Peptidase_S3 | ECOD (1.6) |
KA [auth o] | Peptidase_S3 | e7cw2o1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Peptidase_S3 | ECOD (1.6) |
BA [auth O] | Peptidase_S3 | e7cw2O1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Peptidase_S3 | ECOD (1.6) |
G [auth I] | Peptidase_S3 | e7cw2I1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Peptidase_S3 | ECOD (1.6) |
H [auth C] | Peptidase_S3 | e7cw2C1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Peptidase_S3 | ECOD (1.6) |
HA [auth l] | Peptidase_S3 | e7cw2l1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Peptidase_S3 | ECOD (1.6) |
I [auth F] | Peptidase_S3 | e7cw2F1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Peptidase_S3 | ECOD (1.6) |
NA [auth r] | Peptidase_S3 | e7cw2r1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Peptidase_S3 | ECOD (1.6) |
QA [auth u] | Peptidase_S3 | e7cw2u1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Peptidase_S3 | ECOD (1.6) |
R [auth i] | Peptidase_S3 | e7cw2i1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Peptidase_S3 | ECOD (1.6) |
S [auth c] | Peptidase_S3 | e7cw2c1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Peptidase_S3 | ECOD (1.6) |
T [auth f] | Peptidase_S3 | e7cw2f1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Peptidase_S3 | ECOD (1.6) |
TA [auth x] | Peptidase_S3 | e7cw2x1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Peptidase_S3 | ECOD (1.6) |
WA [auth S] | Peptidase_S3 | e7cw2S1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Peptidase_S3 | ECOD (1.6) |
Y [auth L] | Peptidase_S3 | e7cw2L1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Peptidase_S3 | ECOD (1.6) |
J [auth U] | V-set_8 | e7cw2U2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
J [auth U] | C1-set_1 | e7cw2U1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_1 | ECOD (1.6) |
U [auth W] | V-set_8 | e7cw2W2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
U [auth W] | C1-set_1 | e7cw2W1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_1 | ECOD (1.6) |
K [auth T] | C1-set_4 | e7cw2T1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_4 | ECOD (1.6) |
K [auth T] | V-set | e7cw2T2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
V | C1-set_4 | e7cw2V2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_4 | ECOD (1.6) |
V | V-set | e7cw2V1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
J [auth U], U [auth W] | mAb CHK-263 | VH-CH1 | Mus musculus (house mouse) | IGHV1-80*01, IGHJ2*01, IGHG2C*01, IGHG2C*02, IGHG2C*03 | V-DOMAIN VH, C-DOMAIN CH1 | IG | FAB-GAMMA-1_KAPPA | IMGT (202440-0) |
K [auth T], V | mAb CHK-263 | L-KAPPA | Mus musculus (house mouse) | IGKV5-43*01, IGKJ2*01, IGKC*01, IGKC*02 | V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA | IG | FAB-GAMMA-1_KAPPA | IMGT (202440-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
J [auth U], U [auth W] | Heavy Chain | IGHV1 | - | e2 glycoprotein | e1 glycoprotein, unknown | unknown | SAbDab (2024-10-11) |
K [auth T], V | Light Chain | IGKV5 | Kappa | e2 glycoprotein | e1 glycoprotein, unknown | unknown | SAbDab (2024-10-11) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01589 | Alphavirus E1 glycoprotein (Alpha_E1_glycop) | Alphavirus E1 glycoprotein | - | Family | |
PF00943 | Alphavirus E2 glycoprotein (Alpha_E2_glycop) | Alphavirus E2 glycoprotein | - | Family | |
PF00944 | Alphavirus core protein (Peptidase_S3) | Alphavirus core protein | Also known as coat protein C and capsid protein C. This makes the literature very confusing. Alphaviruses consist of a nucleoprotein core, a lipid membrane which envelopes the core, and glycoprotein spikes protruding from the lipid membrane. | Domain | |
J [auth U], U [auth W] | PF00943 | Alphavirus E2 glycoprotein (Alpha_E2_glycop) | Alphavirus E2 glycoprotein | - | Family |
J [auth U], U [auth W] | PF00944 | Alphavirus core protein (Peptidase_S3) | Alphavirus core protein | Also known as coat protein C and capsid protein C. This makes the literature very confusing. Alphaviruses consist of a nucleoprotein core, a lipid membrane which envelopes the core, and glycoprotein spikes protruding from the lipid membrane. | Domain |
K [auth T], V | PF00943 | Alphavirus E2 glycoprotein (Alpha_E2_glycop) | Alphavirus E2 glycoprotein | - | Family |
K [auth T], V | PF01589 | Alphavirus E1 glycoprotein (Alpha_E1_glycop) | Alphavirus E1 glycoprotein | - | Family |