7CPJ

ycbZ-stalled 70S ribosome


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
M [auth m]SCOP2B SuperfamilyS13-like H2TH domain8096244 3000053 SCOP2B (2022-06-29)
Q [auth q]SCOP2 FamilyCold shock DNA-binding domain-like8105955 4001909 SCOP2 (2022-06-29)
Q [auth q]SCOP2 SuperfamilyNucleic acid-binding proteins8105956 3000135 SCOP2 (2022-06-29)
B [auth b]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like8097404 3001397 SCOP2B (2022-06-29)
EA [auth J]SCOP2B SuperfamilyRibosomal protein L138100808 3001134 SCOP2B (2022-06-29)
GA [auth L]SCOP2B SuperfamilyRibosomal proteins L15p and L18e8096018 3001045 SCOP2B (2022-06-29)
D [auth d]SCOP2 FamilyRibosomal protein S48105961 4001399 SCOP2 (2022-06-29)
D [auth d]SCOP2 SuperfamilyAlpha-L RNA-binding motif8105962 3001473 SCOP2 (2022-06-29)
NA [auth S]SCOP2B SuperfamilyRibosomal protein L228097768 3001078 SCOP2B (2022-06-29)
PA [auth U]SCOP2 FamilyRibosomal proteins L24p and L21e8105761 4001752 SCOP2 (2022-06-29)
PA [auth U]SCOP2 SuperfamilyTranslation proteins SH3-like KOW motif containing domain8105762 3000334 SCOP2 (2022-06-29)
VA [auth 0]SCOP2B SuperfamilyZn-binding ribosomal proteins8093522 3001320 SCOP2B (2022-06-29)
ZA [auth 4]SCOP2B SuperfamilyRibosomal protein L368093554 3001346 SCOP2B (2022-06-29)
AB [auth 5]SCOP2 FamilyRibosomal protein L10-like8105583 4001998 SCOP2 (2022-06-29)
AB [auth 5]SCOP2 SuperfamilyRibosomal protein L10-like8105584 3000665 SCOP2 (2022-06-29)
F [auth f]SCOP2B SuperfamilyRibosomal protein S68066495 3001323 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
J [auth j]PF00338e7cpjj1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: PF00338ECOD (1.6)
K [auth k]PF00411e7cpjk1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF00411ECOD (1.6)
L [auth l]PF00164e7cpjl1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00164ECOD (1.6)
M [auth m]PF00416e7cpjm1 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: PF00416ECOD (1.6)
N [auth n]PF00253e7cpjn1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: PF00253ECOD (1.6)
O [auth o]PF00312e7cpjo1 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: PF00312ECOD (1.6)
P [auth p]PF00886e7cpjp1 A: a+b two layersX: Ribosomal protein S16 (From Topology)H: Ribosomal protein S16 (From Topology)T: Ribosomal protein S16F: PF00886ECOD (1.6)
Q [auth q]PF00366e7cpjq1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00366ECOD (1.6)
R [auth r]PF01084e7cpjr1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: PF01084ECOD (1.6)
S [auth s]PF00203e7cpjs1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: PF00203ECOD (1.6)
B [auth b]PF00318e7cpjb1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: PF00318ECOD (1.6)
T [auth t]PF01649e7cpjt1 A: alpha bundlesX: Spectrin repeat-likeH: Ribosomal protein S20 (From Topology)T: Ribosomal protein S20F: PF01649ECOD (1.6)
U [auth u]PF01165e7cpju1 A: extended segmentsX: 30S ribosomal protein S21 (From Topology)H: 30S ribosomal protein S21 (From Topology)T: 30S ribosomal protein S21F: PF01165ECOD (1.6)
X [auth C]PF00181e7cpjC2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00181ECOD (1.6)
X [auth C]PF03947e7cpjC1 A: beta barrelsX: SH3H: SH3T: SH3F: PF03947ECOD (1.6)
Y [auth D]PF00297e7cpjD1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF00297ECOD (1.6)
Z [auth E]PF00573e7cpjE1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: PF00573ECOD (1.6)
AA [auth F]PF00281,PF00673e7cpjF1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: PF00281,PF00673ECOD (1.6)
BA [auth G]PF00347e7cpjG2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: PF00347ECOD (1.6)
CA [auth H]PF01281e7cpjH2 A: a+b two layersX: L9 N-domain-likeH: L9 N-domain-like (From Topology)T: L9 N-domain-likeF: PF01281ECOD (1.6)
CA [auth H]PF03948e7cpjH1 A: a+b two layersX: Ribosomal protein L9 C-domain (From Topology)H: Ribosomal protein L9 C-domain (From Topology)T: Ribosomal protein L9 C-domainF: PF03948ECOD (1.6)
C [auth c]PF00189e7cpjc1 A: a+b two layersX: T-foldH: Ribosomal protein S3-C (From Topology)T: Ribosomal protein S3-CF: PF00189ECOD (1.6)
C [auth c]PF07650e7cpjc2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: PF07650ECOD (1.6)
DA [auth I]PF00298e7cpjI2 A: alpha arraysX: HTHH: HTHT: Ribosomal protein L11, C-terminal domainF: PF00298ECOD (1.6)
DA [auth I]PF03946e7cpjI1 A: a+b two layersX: Ribosomal protein L11/L12e N-terminal domain-likeH: Ribosomal protein L11/L12e N-terminal domain (From Topology)T: Ribosomal protein L11/L12e N-terminal domainF: PF03946ECOD (1.6)
EA [auth J]PF00572e7cpjJ1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: PF00572ECOD (1.6)
FA [auth K]PF00238e7cpjK1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF00238ECOD (1.6)
GA [auth L]PF00828e7cpjL1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF00828ECOD (1.6)
HA [auth M]PF00252e7cpjM1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: PF00252ECOD (1.6)
IA [auth N]PF01196e7cpjN1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Prokaryotic ribosomal protein L17 (From Topology)T: Prokaryotic ribosomal protein L17F: PF01196ECOD (1.6)
JA [auth O]PF00861e7cpjO1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF00861ECOD (1.6)
KA [auth P]PF01245e7cpjP1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01245ECOD (1.6)
LA [auth Q]PF00453e7cpjQ1 A: alpha arraysX: PABP domain-likeH: Ribosomal protein L20 (From Topology)T: Ribosomal protein L20F: PF00453ECOD (1.6)
MA [auth R]PF00829e7cpjR1 A: beta barrelsX: Ribosomal protein L21p (From Topology)H: Ribosomal protein L21p (From Topology)T: Ribosomal protein L21pF: PF00829ECOD (1.6)
D [auth d]PF00163,PF01479e7cpjd1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: PF00163,PF01479ECOD (1.6)
NA [auth S]PF00237e7cpjS1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: PF00237ECOD (1.6)
OA [auth T]PF00276e7cpjT1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00276ECOD (1.6)
PA [auth U]PF00467,PF17136e7cpjU1 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF17136ECOD (1.6)
QA [auth V]PF01386e7cpjV1 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: PF01386ECOD (1.6)
RA [auth W]PF01016e7cpjW1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal L27 proteinF: PF01016ECOD (1.6)
SA [auth X]PF00830e7cpjX1 A: few secondary structure elementsX: Ribosomal protein bL28-related (From Homology)H: Ribosomal protein bL28-relatedT: Ribosomal protein L28F: PF00830ECOD (1.6)
TA [auth Y]PF00831e7cpjY1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: PF00831ECOD (1.6)
UA [auth Z]PF00327e7cpjZ1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: PF00327ECOD (1.6)
VA [auth 0]PF01783e7cpj01 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01783ECOD (1.6)
WA [auth 1]PF00471e7cpj11 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF00471ECOD (1.6)
E [auth e]PF03719e7cpje1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF03719ECOD (1.6)
E [auth e]PF00333e7cpje2 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: PF00333ECOD (1.6)
XA [auth 2]PF00468e7cpj21 A: extended segmentsX: 50S ribosomal protein L34 (From Topology)H: 50S ribosomal protein L34 (From Topology)T: 50S ribosomal protein L34F: PF00468ECOD (1.6)
YA [auth 3]PF01632e7cpj31 A: a+b two layersX: Ribosomal protein L35p (From Topology)H: Ribosomal protein L35p (From Topology)T: Ribosomal protein L35pF: PF01632ECOD (1.6)
ZA [auth 4]PF00444e7cpj41 A: few secondary structure elementsX: Ribosomal protein L36 (From Topology)H: Ribosomal protein L36 (From Topology)T: Ribosomal protein L36F: PF00444ECOD (1.6)
AB [auth 5]PF00466e7cpj51 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein L10-like (From Topology)T: Ribosomal protein L10-likeF: PF00466ECOD (1.6)
BB [auth 6]PF01197e7cpj61 A: few secondary structure elementsX: Ribosomal protein L31p (From Topology)H: Ribosomal protein L31p (From Topology)T: Ribosomal protein L31pF: PF01197ECOD (1.6)
F [auth f]PF01250e7cpjf1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S6 (From Topology)T: Ribosomal protein S6F: PF01250ECOD (1.6)
G [auth g]PF00177e7cpjg1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: PF00177ECOD (1.6)
H [auth h]PF00410e7cpjh2 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: PF00410ECOD (1.6)
H [auth h]PF00410e7cpjh1 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: PF00410ECOD (1.6)
I [auth i]PF00380e7cpji1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF00380ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
L [auth l]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family
M [auth m]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
Q [auth q]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
B [auth b]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
U [auth u]PF01165Ribosomal protein S21 (Ribosomal_S21)Ribosomal protein S21- Family
X [auth C]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
X [auth C]PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
EA [auth J]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
GA [auth L]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
IA [auth N]PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
D [auth d]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
D [auth d]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
NA [auth S]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
PA [auth U]PF17136Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24)Ribosomal proteins 50S L24/mitochondrial 39S L24- Family
PA [auth U]PF00467KOW motif (KOW)KOW motif- Family
QA [auth V]PF01386Ribosomal L25p family (Ribosomal_L25p)Ribosomal L25p familyRibosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress.Domain
VA [auth 0]PF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family
E [auth e]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domain- Domain
E [auth e]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domain- Domain
YA [auth 3]PF01632Ribosomal protein L35 (Ribosomal_L35p)Ribosomal protein L35- Family
ZA [auth 4]PF00444Ribosomal protein L36 (Ribosomal_L36)Ribosomal protein L36- Domain
BB [auth 6]PF01197Ribosomal protein L31 (Ribosomal_L31)Ribosomal protein L31- Family
F [auth f]PF01250Ribosomal protein S6 (Ribosomal_S6)Ribosomal protein S6- Domain
H [auth h]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth a]16S ribosomal RNA---
J [auth j]30S ribosomal protein S10---
K [auth k]30S ribosomal protein S11---
L [auth l]30S ribosomal protein S12---
M [auth m]30S ribosomal protein S13
N [auth n]30S ribosomal protein S14---
O [auth o]30S ribosomal protein S15---
P [auth p]30S ribosomal protein S16---
Q [auth q]30S ribosomal protein S17---
R [auth r]30S ribosomal protein S18---
S [auth s]30S ribosomal protein S19---
B [auth b]30S ribosomal protein S2
T [auth t]30S ribosomal protein S20---
U [auth u]30S ribosomal protein S21---
V [auth A]23S ribosomal RNA---
W [auth B]5S ribosomal RNA---
X [auth C]50S ribosomal protein L2---
Y [auth D]50S ribosomal protein L3---
Z [auth E]50S ribosomal protein L4---
AA [auth F]50S ribosomal protein L5---
BA [auth G]50S ribosomal protein L6---
CA [auth H]50S ribosomal protein L9---
C [auth c]30S ribosomal protein S3---
DA [auth I]50S ribosomal protein L11---
EA [auth J]50S ribosomal protein L13---
FA [auth K]50S ribosomal protein L14---
GA [auth L]50S ribosomal protein L15
HA [auth M]50S ribosomal protein L16---
IA [auth N]50S ribosomal protein L17---
JA [auth O]50S ribosomal protein L18---
KA [auth P]50S ribosomal protein L19---
LA [auth Q]50S ribosomal protein L20---
MA [auth R]50S ribosomal protein L21---
D [auth d]30S ribosomal protein S4---
NA [auth S]50S ribosomal protein L22
OA [auth T]50S ribosomal protein L23---
PA [auth U]50S ribosomal protein L24---
QA [auth V]50S ribosomal protein L25---
RA [auth W]50S ribosomal protein L27---
SA [auth X]50S ribosomal protein L28---
TA [auth Y]50S ribosomal protein L29---
UA [auth Z]50S ribosomal protein L30---
VA [auth 0]50S ribosomal protein L32---
WA [auth 1]50S ribosomal protein L33---
E [auth e]30S ribosomal protein S5---
XA [auth 2]50S ribosomal protein L34---
YA [auth 3]50S ribosomal protein L35---
ZA [auth 4]50S ribosomal protein L36
AB [auth 5]50S ribosomal protein L10---
BB [auth 6]50S ribosomal protein L31---
CB [auth 9]P/P tRNA---
DB [auth x]mRNA---
F [auth f]30S ribosomal protein S6
G [auth g]30S ribosomal protein S7---
H [auth h]30S ribosomal protein S8---
I [auth i]30S ribosomal protein S9---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
M [auth m]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
M [auth m]IPR001892Small ribosomal subunit protein uS13Family
M [auth m]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
M [auth m]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
M [auth m]IPR019980Small ribosomal subunit protein uS13, bacterial-typeFamily
B [auth b]IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
B [auth b]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
B [auth b]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
B [auth b]IPR001865Small ribosomal subunit protein uS2Family
GA [auth L]IPR005749Large ribosomal subunit protein uL15, bacterial-typeFamily
GA [auth L]IPR021131Large ribosomal subunit protein uL15/eL18Domain
GA [auth L]IPR030878Large ribosomal subunit protein uL15Family
GA [auth L]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
GA [auth L]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
NA [auth S]IPR047867Large ribosomal subunit protein uL22, bacterial/organelle-typeFamily
NA [auth S]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
NA [auth S]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
NA [auth S]IPR001063Large ribosomal subunit protein uL22Family
NA [auth S]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
ZA [auth 4]IPR000473Large ribosomal subunit protein bL36Family
ZA [auth 4]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
F [auth f]IPR020815Small ribosomal subunit protein bS6, conserved siteConserved Site
F [auth f]IPR000529Small ribosomal subunit protein bS6Family
F [auth f]IPR020814Small ribosomal subunit protein bS6, plastid/chloroplastFamily
F [auth f]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
F [auth f]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily