7C8P
Structural and functional characterization of human group A rotavirus P[25] VP8*
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d7c8pa_ | All beta proteins | Concanavalin A-like lectins/glucanases | Concanavalin A-like lectins/glucanases | automated matches | automated matches | (Rotavirus A ) [TaxId: 28875 ], | SCOPe (2.08) |
B | d7c8pb_ | All beta proteins | Concanavalin A-like lectins/glucanases | Concanavalin A-like lectins/glucanases | automated matches | automated matches | (Rotavirus A ) [TaxId: 28875 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Concanavalin A-like lectins/glucanases | 8102859 | 3000120 | SCOP2B (2022-06-29) |
B | SCOP2 Family | vp4 sialic acid binding domain | 8102858 | 4002124 | SCOP2 (2022-06-29) |
B | SCOP2 Superfamily | Concanavalin A-like lectins/glucanases | 8102859 | 3000120 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | VP4_haemagglut | e7c8pA1 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Concanavalin A-like lectins/glucanases | F: VP4_haemagglut | ECOD (1.6) |
B | VP4_haemagglut | e7c8pB1 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Concanavalin A-like lectins/glucanases | F: VP4_haemagglut | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00426 | Outer Capsid protein VP4 (Hemagglutinin) Concanavalin-like domain (VP4_haemagglut) | Outer Capsid protein VP4 (Hemagglutinin) Concanavalin-like domain | This entry represents the N-terminal concanavalin-like domain from the VP4 protein of rotavirus. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR000416 | Haemagglutinin outer capsid protein VP4, concanavalin-like domain | Domain | |
IPR035330 | Rotavirus VP4, membrane interaction domain | Domain | |
IPR013320 | Concanavalin A-like lectin/glucanase domain superfamily | Homologous Superfamily | |
IPR035329 | Rotavirus VP4 helical domain | Domain | |
IPR042546 | Outer capsid protein VP4 | Family | |
IPR038017 | Rotavirus VP4, membrane interaction domain superfamily | Homologous Superfamily |