Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
C [auth A]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8101205 3000918 SCOP2B (2022-06-29)
E [auth C]SCOP2 FamilyPicornaviridae-like VP (VP1, VP2, VP3 and VP4) 8101358 4003466 SCOP2 (2022-06-29)
E [auth C]SCOP2 SuperfamilyPositive stranded ssRNA viruses-like 8101359 3000918 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth L]C1-set_4e7c80L2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: C1-set_4ECOD (1.6)
A [auth L]V-sete7c80L1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-setECOD (1.6)
B [auth H]V-set_8e7c80H2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_8ECOD (1.6)
B [auth H]C1-set_1e7c80H1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: C1-set_1ECOD (1.6)
C [auth A]Rhv_5e7c80A1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Rhv_5ECOD (1.6)
D [auth B]Rhv_1e7c80B1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Rhv_1ECOD (1.6)
E [auth C]Rhv_3e7c80C1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Rhv_3ECOD (1.6)
F [auth D]Pico_P1A_Ne7c80D1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: Pico_P1A_NECOD (1.6)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
A [auth L]Light ChainIGKV5 Kappavp1 | vp3 | vp2SAbDab (2024-11-01)
B [auth H]Heavy ChainIGHV5 -vp1 | vp3 | vp2SAbDab (2024-11-01)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
C [auth A]PF00073picornavirus capsid protein (Rhv)picornavirus capsid proteinCAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornavi ...CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur.
Domain
D [auth B]PF00073picornavirus capsid protein (Rhv)picornavirus capsid proteinCAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornavi ...CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur.
Domain
E [auth C]PF00073picornavirus capsid protein (Rhv)picornavirus capsid proteinCAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornavi ...CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur.
Domain
F [auth D]PF02226Picornavirus coat protein (VP4) (Pico_P1A)Picornavirus coat protein (VP4)- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth L]Light chain---
B [auth H]Heavy chain---
C [auth A]VP1
D [auth B]VP2
E [auth C]VP3
F [auth D]VP4 -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
C [auth A]IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
C [auth A]IPR002527Picornavirus 2B proteinDomain
C [auth A]IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
C [auth A]IPR036988Picornavirus coat protein VP4 superfamilyHomologous Superfamily
C [auth A]IPR003593AAA+ ATPase domainDomain
C [auth A]IPR003138Picornavirus coat protein VP4Family
C [auth A]IPR000199Peptidase C3A/C3B, picornaviralDomain
C [auth A]IPR001676Picornavirus capsidDomain
C [auth A]IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
C [auth A]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
C [auth A]IPR000081Peptidase C3, picornavirus core protein 2ADomain
C [auth A]IPR029053Viral coat protein subunitHomologous Superfamily
C [auth A]IPR009003Peptidase S1, PA clanHomologous Superfamily
C [auth A]IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
C [auth A]IPR044067Picornavirales 3C/3C-like protease domainDomain
C [auth A]IPR033703Picornavirus/Calicivirus coat proteinDomain
C [auth A]IPR014838Poliovirus 3A protein-likeDomain
C [auth A]IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
C [auth A]IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
C [auth A]IPR007094RNA-directed RNA polymerase, catalytic domainDomain
C [auth A]IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
D [auth B]IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
D [auth B]IPR002527Picornavirus 2B proteinDomain
D [auth B]IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
D [auth B]IPR036988Picornavirus coat protein VP4 superfamilyHomologous Superfamily
D [auth B]IPR003593AAA+ ATPase domainDomain
D [auth B]IPR003138Picornavirus coat protein VP4Family
D [auth B]IPR000199Peptidase C3A/C3B, picornaviralDomain
D [auth B]IPR001676Picornavirus capsidDomain
D [auth B]IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
D [auth B]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
D [auth B]IPR000081Peptidase C3, picornavirus core protein 2ADomain
D [auth B]IPR029053Viral coat protein subunitHomologous Superfamily
D [auth B]IPR009003Peptidase S1, PA clanHomologous Superfamily
D [auth B]IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
D [auth B]IPR044067Picornavirales 3C/3C-like protease domainDomain
D [auth B]IPR033703Picornavirus/Calicivirus coat proteinDomain
D [auth B]IPR014838Poliovirus 3A protein-likeDomain
D [auth B]IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
D [auth B]IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
D [auth B]IPR007094RNA-directed RNA polymerase, catalytic domainDomain
D [auth B]IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
E [auth C]IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
E [auth C]IPR002527Picornavirus 2B proteinDomain
E [auth C]IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
E [auth C]IPR036988Picornavirus coat protein VP4 superfamilyHomologous Superfamily
E [auth C]IPR003593AAA+ ATPase domainDomain
E [auth C]IPR003138Picornavirus coat protein VP4Family
E [auth C]IPR000199Peptidase C3A/C3B, picornaviralDomain
E [auth C]IPR001676Picornavirus capsidDomain
E [auth C]IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
E [auth C]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
E [auth C]IPR000081Peptidase C3, picornavirus core protein 2ADomain
E [auth C]IPR029053Viral coat protein subunitHomologous Superfamily
E [auth C]IPR009003Peptidase S1, PA clanHomologous Superfamily
E [auth C]IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
E [auth C]IPR044067Picornavirales 3C/3C-like protease domainDomain
E [auth C]IPR033703Picornavirus/Calicivirus coat proteinDomain
E [auth C]IPR014838Poliovirus 3A protein-likeDomain
E [auth C]IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
E [auth C]IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
E [auth C]IPR007094RNA-directed RNA polymerase, catalytic domainDomain
E [auth C]IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
F [auth D]IPR003138Picornavirus coat protein VP4Family
F [auth D]IPR036988Picornavirus coat protein VP4 superfamilyHomologous Superfamily

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
F [auth D]MYR RESIDAA0059 , AA0307

PSI-MOD :  N-myristoylglycine MOD:00068 , S-myristoyl-L-cysteine MOD:00312