7AOR | pdb_00007aor

mt-SSU from Trypanosoma cruzi in complex with mt-IF-3.

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
YA [auth bc]	SBP_bac_1	e7aorbc1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SBP_bac_1	ECOD (v295.2)
VA [auth b]	SBP_bac_1	e7aorb1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SBP_bac_1	ECOD (v295.2)
KA [auth x]		e7aorx01	A: alpha arrays	X: Rossmann-like	H: Rossmann-related	T: FAD/NAD(P)-binding domain	F:	ECOD (v295.2)
C [auth r]		e7aorr01	A: alpha arrays	X: Rossmann-like	H: Rossmann-related	T: FAD/NAD(P)-binding domain	F:	ECOD (v295.2)
CA [auth ar]		e7aorar01	A: alpha arrays	X: Rossmann-like	H: Rossmann-related	T: FAD/NAD(P)-binding domain	F:	ECOD (v295.2)
M [auth aj]	SBP_bac_1	e7aoraj1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SBP_bac_1	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
DB [auth A], EB [auth 2]	PF03719	Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)	Ribosomal protein S5, C-terminal domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
Y [auth d]	uS9m	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
EA [auth ap]	mS62	-	-	-
GA [auth ai]	mS56	-	-	-
TA [auth g]	bS21m	-	-	-
WA [auth bd]	MURF5	-	-	-
ZA [auth aa]	mS48	cation binding ion binding binding metal ion binding small molecule binding	-	-
I [auth ax]	mS70	-	-	-
H [auth ay]	mS71	-	-	-
G [auth az]	mS72	-	-	-
F [auth e]	uS10m	-	-	-
DB [auth A], EB [auth 2]	RNA (478-MER)	-	-	-
CB [auth as]	mS65	-	-	-
BB [auth be]	Ribosome protein S12	-	-	-
AB [auth k]	30S Ribosomal protein S17-like protein	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle protein-containing complex ribonucleoprotein complex membraneless organelle intracellular membraneless organelle ribosome
YA [auth bc]	mt-iF3	-	-	-
XA [auth a]	Ribosomal_S5_C domain-containing protein	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
E [auth h]	uS14m	-	-	-
VA [auth b]	bS6m	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
UA [auth j]	bS16m	-	-	-
SA [auth Ca]	mS22	-	-	-
RA [auth p]	mS23	-	-	-
QA [auth q]	mS26	-	-	-
PA [auth al]	mS59	-	-	-
OA [auth t]	Trafficking protein particle complex subunit	-	localization transport cellular process establishment of localization Golgi vesicle transport vesicle-mediated transport	protein-containing complex intracellular protein-containing complex TRAPP complex vesicle tethering complex membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure Golgi apparatus organelle cytoplasm intracellular membrane-bounded organelle endomembrane system endoplasmic reticulum
NA [auth bb]	mS38	-	-	-
D [auth n]	uS19	-	-	-
MA [auth v]	mS37	-	-	-
LA [auth w]	Protein FYV4, mitochondrial	-	-	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle
KA [auth x]	Superoxide dismutase, putative	cation binding ion binding binding metal ion binding small molecule binding superoxide dismutase activity oxidoreductase activity, acting on superoxide radicals as acceptor oxidoreductase activity antioxidant activity catalytic activity	-	-
JA [auth y]	Sod_Fe_C domain-containing protein	cation binding ion binding binding metal ion binding small molecule binding superoxide dismutase activity oxidoreductase activity, acting on superoxide radicals as acceptor oxidoreductase activity antioxidant activity catalytic activity	-	-
IA [auth z]	mS47	-	fatty acid metabolic process lipid catabolic process catabolic process oxoacid metabolic process carboxylic acid metabolic process primary metabolic process lipid modification fatty acid catabolic process monocarboxylic acid catabolic process fatty acid oxidation carboxylic acid catabolic process fatty acid beta-oxidation metabolic process cellular process fatty acid metabolic process lipid catabolic process catabolic process oxoacid metabolic process carboxylic acid metabolic process primary metabolic process lipid modification fatty acid catabolic process monocarboxylic acid catabolic process fatty acid oxidation carboxylic acid catabolic process fatty acid beta-oxidation metabolic process cellular process small molecule metabolic process monocarboxylic acid metabolic process lipid oxidation small molecule catabolic process lipid metabolic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle
HA [auth an]	mS60	-	-	-
FA [auth ao]	mS61	-	-	-
DA [auth aq]	mS63	-	-	-
C [auth r]	mS29	binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding structural molecule activity structural constituent of ribosome	-	membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle organellar small ribosomal subunit membrane-bounded organelle protein-containing complex intracellular anatomical structure mitochondrion membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit intracellular organelle ribosomal subunit cellular anatomical structure organellar ribosome membraneless organelle organellar small ribosomal subunit ribosome mitochondrial protein-containing complex mitochondrial ribosome small ribosomal subunit intracellular membraneless organelle intracellular membrane-bounded organelle organelle lumen organelle ribonucleoprotein complex cytoplasm
CA [auth ar]	AKAP7_NLS domain-containing protein	protein kinase A binding protein binding binding protein kinase A regulatory subunit binding	-	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol
BA [auth at]	mS66	cation binding ion binding binding metal ion binding small molecule binding	-	-
AA [auth av]	mS68	-	-	-
Z [auth ba]	mS73	-	-	-
X [auth c]	uS8m	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
W [auth f]	uS11m	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
V [auth i]	uS15m	-	-	-
U [auth m]	bS18m	-	-	-
T [auth ad]	mS51	-	-	-
B [auth s]	mS33	-	-	-
S [auth ab]	mS49	-	-	-
R [auth ac]	mS50	-	-	-
Q [auth l]	mS52	-	-	-
P [auth ae]	mS53	-	-	-
O [auth af]	mS54	-	-	-
N [auth ag]	mS55	-	-	-
M [auth aj]	mS57	-	-	-
L [auth ak]	mS58	-	-	-
K [auth au]	Rhodanese domain-containing protein	thiosulfate-cyanide sulfurtransferase activity sulfurtransferase activity transferase activity, transferring sulphur-containing groups transferase activity catalytic activity	-	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle
J [auth aw]	mS69	-	-	-
A [auth u]	mS35	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
Y [auth d]	IPR020568	Ribosomal protein uS5 domain 2-type superfamily	Homologous Superfamily
Y [auth d]	IPR000754	Small ribosomal subunit protein uS9	Family
Y [auth d]	IPR014721	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Homologous Superfamily
F [auth e]	IPR018392	LysM domain	Domain
BB [auth be]	IPR035306	Small ribosomal subunit protein uS12m	Family
AB [auth k]	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
AB [auth k]	IPR000266	Small ribosomal subunit protein uS17	Family
XA [auth a]	IPR005324	Small ribosomal subunit protein uS5, C-terminal	Domain
VA [auth b]	IPR035980	Small ribosomal subunit protein bS6 superfamily	Homologous Superfamily
VA [auth b]	IPR014717	Translation elongation factor EF1B/small ribosomal subunit protein bS6	Homologous Superfamily
RA [auth p]	IPR059199	Ribosomal protein S23-like	Family
OA [auth t]	IPR016696	TRAPP I complex, subunit 5	Family
LA [auth w]	IPR019083	Small ribosomal subunit protein mS41, SAM domain	Domain
LA [auth w]	IPR039603	Small ribosomal subunit protein mS41	Family
KA [auth x]	IPR036324	Manganese/iron superoxide dismutase, N-terminal domain superfamily	Homologous Superfamily
KA [auth x]	IPR019832	Manganese/iron superoxide dismutase, C-terminal	Domain
KA [auth x]	IPR036314	Manganese/iron superoxide dismutase, C-terminal domain superfamily	Homologous Superfamily
JA [auth y]	IPR019832	Manganese/iron superoxide dismutase, C-terminal	Domain
JA [auth y]	IPR047002	T-complex protein 10, C-terminal domain superfamily	Homologous Superfamily
JA [auth y]	IPR036314	Manganese/iron superoxide dismutase, C-terminal domain superfamily	Homologous Superfamily
IA [auth z]	IPR029045	ClpP/crotonase-like domain superfamily	Homologous Superfamily
IA [auth z]	IPR045004	Enoyl-CoA hydratase/isomerase domain	Domain
HA [auth an]	IPR036894	Nucleoid-associated protein YbaB-like domain superfamily	Homologous Superfamily
C [auth r]	IPR019368	Small ribosomal subunit protein mS29	Family
CA [auth ar]	IPR052641	A-kinase anchor protein 7 isoform gamma	Family
CA [auth ar]	IPR019510	A-kinase anchor protein 7-like, phosphoesterase domain	Domain
CA [auth ar]	IPR009097	Cyclic phosphodiesterase	Homologous Superfamily
BA [auth at]	IPR025487	Treble clef zinc finger domain	Domain
AA [auth av]	IPR029071	Ubiquitin-like domain superfamily	Homologous Superfamily
X [auth c]	IPR000630	Small ribosomal subunit protein uS8	Family
X [auth c]	IPR035987	Small ribosomal subunit protein uS8 superfamily	Homologous Superfamily
W [auth f]	IPR036967	Small ribosomal subunit protein uS11 superfamily	Homologous Superfamily
V [auth i]	IPR009068	uS15/NS1, RNA-binding domain superfamily	Homologous Superfamily
U [auth m]	IPR036870	Small ribosomal subunit protein bS18 superfamily	Homologous Superfamily
T [auth ad]	IPR011990	Tetratricopeptide-like helical domain superfamily	Homologous Superfamily
O [auth af]	IPR011990	Tetratricopeptide-like helical domain superfamily	Homologous Superfamily
N [auth ag]	IPR011990	Tetratricopeptide-like helical domain superfamily	Homologous Superfamily
K [auth au]	IPR001763	Rhodanese-like domain	Domain
K [auth au]	IPR036873	Rhodanese-like domain superfamily	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.