cryo-EM structure of ExbBD from Serratia Marcescens
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| F | e7ajqF01 | A: beta barrels | X: Histone-like | H: all-alpha NTP pyrophosphatases | T: Hypothetical protein AF_0060 | F: | ECOD (v294.2) | |
| B | PP-binding | e7ajqB1 | A: beta barrels | X: CNF1/YfiH-like putative cysteine hydrolases | H: CNF1/YfiH-like putative cysteine hydrolases | T: CNF1/YfiH-like putative cysteine hydrolases | F: PP-binding | ECOD (v294.2) |
| D | PP-binding | e7ajqD1 | A: beta barrels | X: CNF1/YfiH-like putative cysteine hydrolases | H: CNF1/YfiH-like putative cysteine hydrolases | T: CNF1/YfiH-like putative cysteine hydrolases | F: PP-binding | ECOD (v294.2) |
| E | PP-binding | e7ajqE1 | A: beta barrels | X: CNF1/YfiH-like putative cysteine hydrolases | H: CNF1/YfiH-like putative cysteine hydrolases | T: CNF1/YfiH-like putative cysteine hydrolases | F: PP-binding | ECOD (v294.2) |
| C | PP-binding | e7ajqC1 | A: beta barrels | X: CNF1/YfiH-like putative cysteine hydrolases | H: CNF1/YfiH-like putative cysteine hydrolases | T: CNF1/YfiH-like putative cysteine hydrolases | F: PP-binding | ECOD (v294.2) |
| A | PP-binding | e7ajqA1 | A: beta barrels | X: CNF1/YfiH-like putative cysteine hydrolases | H: CNF1/YfiH-like putative cysteine hydrolases | T: CNF1/YfiH-like putative cysteine hydrolases | F: PP-binding | ECOD (v294.2) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| Biopolymer transport protein ExbD | ||||
| Biopolymer transport protein ExbB | - | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR014170 | TonB system transport protein ExbD type-1 | Family | |
| IPR003400 | Biopolymer transport protein ExbD/TolR | Family |
Membrane Protein Annotation: OPM OPM Database Homepage
| Chains | External Link | Type | Class | Superfamily | Family |
|---|---|---|---|---|---|
| OPM | Transmembrane | Alpha-helical polytopic | MotA/TolQ/ExbB channel | MotA/TolQ/ExbB channel |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
| Chains | External Link | Comment |
|---|---|---|
| PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
| Chains | External Link | Comment |
|---|---|---|
| MemProtMD | Annotated as membrane protein by MemProtMD |














