7ABO
Structure of the N318H variant of the reversible pyrrole-2-carboxylic acid decarboxylase PA0254/HudA in complex with FMN
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth C] | UbiD_2nd | e7aboC3 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: UbiD_2nd | ECOD (1.6) |
A [auth C] | UbiD_3rd | e7aboC2 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: UbiD C-terminal domain-like (From Topology) | T: UbiD C-terminal domain-like | F: UbiD_3rd | ECOD (1.6) |
A [auth C] | UbiD_1st | e7aboC1 | A: a+b two layers | X: N-terminal subdomain in UbiD middle domain (From Topology) | H: N-terminal subdomain in UbiD middle domain (From Topology) | T: N-terminal subdomain in UbiD middle domain | F: UbiD_1st | ECOD (1.6) |
B | UbiD_2nd | e7aboB2 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: UbiD_2nd | ECOD (1.6) |
B | UbiD_3rd | e7aboB3 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: UbiD C-terminal domain-like (From Topology) | T: UbiD C-terminal domain-like | F: UbiD_3rd | ECOD (1.6) |
B | UbiD_1st | e7aboB1 | A: a+b two layers | X: N-terminal subdomain in UbiD middle domain (From Topology) | H: N-terminal subdomain in UbiD middle domain (From Topology) | T: N-terminal subdomain in UbiD middle domain | F: UbiD_1st | ECOD (1.6) |
C [auth D] | UbiD_2nd | e7aboD3 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: UbiD_2nd | ECOD (1.6) |
C [auth D] | UbiD_3rd | e7aboD1 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: UbiD C-terminal domain-like (From Topology) | T: UbiD C-terminal domain-like | F: UbiD_3rd | ECOD (1.6) |
C [auth D] | UbiD_1st | e7aboD2 | A: a+b two layers | X: N-terminal subdomain in UbiD middle domain (From Topology) | H: N-terminal subdomain in UbiD middle domain (From Topology) | T: N-terminal subdomain in UbiD middle domain | F: UbiD_1st | ECOD (1.6) |
D [auth A] | UbiD_2nd | e7aboA1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: UbiD_2nd | ECOD (1.6) |
D [auth A] | UbiD_3rd | e7aboA3 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: UbiD C-terminal domain-like (From Topology) | T: UbiD C-terminal domain-like | F: UbiD_3rd | ECOD (1.6) |
D [auth A] | UbiD_1st | e7aboA2 | A: a+b two layers | X: N-terminal subdomain in UbiD middle domain (From Topology) | H: N-terminal subdomain in UbiD middle domain (From Topology) | T: N-terminal subdomain in UbiD middle domain | F: UbiD_1st | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth C], B, C [auth D], D [auth A] | PF20695 | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase N-terminal domain (UbiD_N) | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase N-terminal domain | This family has been characterised as 3-octaprenyl-4- hydroxybenzoate carboxy-lyase enzymes [1]. This enzyme catalyses the third reaction in ubiquinone biosynthesis. For optimal activity the carboxy-lase was shown to require Mn2+ [1]. This entry repr ... | Domain |
A [auth C], B, C [auth D], D [auth A] | PF20696 | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase C-terminal domain (UbiD_C) | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase C-terminal domain | This family has been characterised as 3-octaprenyl-4- hydroxybenzoate carboxy-lyase enzymes [1]. This enzyme catalyses the third reaction in ubiquinone biosynthesis. For optimal activity the carboxy-lase was shown to require Mn2+ [1]. This entry repr ... | Domain |
A [auth C], B, C [auth D], D [auth A] | PF01977 | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Rift-related domain (UbiD) | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Rift-related domain | This family has been characterised as 3-octaprenyl-4- hydroxybenzoate carboxy-lyase enzymes [1]. This enzyme catalyses the third reaction in ubiquinone biosynthesis. For optimal activity the carboxy-lase was shown to require Mn2+ [1]. This entry repr ... | Domain |