7A5P

Human C Complex Spliceosome - Medium-resolution PERIPHERY

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
Q [auth P]SCOP2B SuperfamilyRNA-binding domain RBD8064957 3000110 SCOP2B (2022-06-29)
T [auth U]SCOP2B SuperfamilyARM repeat-like8090869 3000116 SCOP2B (2022-06-29)
T [auth U]SCOP2B SuperfamilyUpf1 beta-barrel domain-like8090870 3002168 SCOP2B (2022-06-29)
T [auth U]SCOP2B SuperfamilyRecA-like P-loop NTPases8090871 3002019 SCOP2B (2022-06-29)
T [auth U]SCOP2B SuperfamilyRecA-like P-loop NTPases8090872 3002019 SCOP2B (2022-06-29)
U [auth W]SCOP2B SuperfamilyL domain-like8043993 3001010 SCOP2B (2022-06-29)
V [auth X]SCOP2B SuperfamilyRNA-binding domain RBD8035327 3000110 SCOP2B (2022-06-29)
X [auth a]SCOP2B SuperfamilySm-like ribonucleoproteins8041751 3000419 SCOP2B (2022-06-29)
IA [auth l]SCOP2B SuperfamilySm-like ribonucleoproteins8041751 3000419 SCOP2B (2022-06-29)
Y [auth b]SCOP2B SuperfamilySm-like ribonucleoproteins8041747 3000419 SCOP2B (2022-06-29)
JA [auth m]SCOP2B SuperfamilySm-like ribonucleoproteins8041747 3000419 SCOP2B (2022-06-29)
KA [auth n]SCOP2B SuperfamilySm-like ribonucleoproteins8041748 3000419 SCOP2B (2022-06-29)
Z [auth c]SCOP2B SuperfamilySm-like ribonucleoproteins8041748 3000419 SCOP2B (2022-06-29)
AA [auth d]SCOP2B SuperfamilySm-like ribonucleoproteins8041749 3000419 SCOP2B (2022-06-29)
EA [auth h]SCOP2B SuperfamilySm-like ribonucleoproteins8041749 3000419 SCOP2B (2022-06-29)
BA [auth e]SCOP2B SuperfamilySm-like ribonucleoproteins8063476 3000419 SCOP2B (2022-06-29)
GA [auth j]SCOP2B SuperfamilySm-like ribonucleoproteins8063476 3000419 SCOP2B (2022-06-29)
CA [auth f]SCOP2B SuperfamilySm-like ribonucleoproteins8063452 3000419 SCOP2B (2022-06-29)
FA [auth i]SCOP2B SuperfamilySm-like ribonucleoproteins8063452 3000419 SCOP2B (2022-06-29)
DA [auth g]SCOP2B SuperfamilySm-like ribonucleoproteins8063468 3000419 SCOP2B (2022-06-29)
HA [auth k]SCOP2B SuperfamilySm-like ribonucleoproteins8063468 3000419 SCOP2B (2022-06-29)
LA [auth o]SCOP2B SuperfamilyRNA-binding domain RBD8039202 3000110 SCOP2B (2022-06-29)
NA [auth q]SCOP2B SuperfamilyBrl domain-like8036193 3000115 SCOP2B (2022-06-29)
NA [auth q]SCOP2B SuperfamilyE set domains8055093 3000070 SCOP2B (2022-06-29)
RA [auth v]SCOP2B SuperfamilyMago nashi protein8042952 3000634 SCOP2B (2022-06-29)
SA [auth w]SCOP2B SuperfamilyRNA-binding domain RBD8042953 3000110 SCOP2B (2022-06-29)
UA [auth y]SCOP2B SuperfamilyRecA-like P-loop NTPases8042951 3002019 SCOP2B (2022-06-29)
UA [auth y]SCOP2B SuperfamilyRecA-like P-loop NTPases8042950 3002019 SCOP2B (2022-06-29)
VA [auth z]SCOP2B SuperfamilyCyclophilin-like8036491 3000168 SCOP2B (2022-06-29)
E [auth A]SCOP2B SuperfamilyJAB1/MPN domain-like8053277 3001105 SCOP2B (2022-06-29)
E [auth A]SCOP2B SuperfamilyRibonuclease H-like8041105 3000143 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
N [auth M]F_UNCLASSIFIEDe7a5pM1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: F_UNCLASSIFIEDECOD (1.6)
P [auth O]F_UNCLASSIFIEDe7a5pO1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: F_UNCLASSIFIEDECOD (1.6)
Q [auth P]PF00076e7a5pP1 A: a+b two layersX: Alpha-beta plaitsH: RNA-binding domain, RBD (From Topology)T: RNA-binding domain, RBDF: PF00076ECOD (1.6)
S [auth T]PF02854e7a5pT1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: PF02854ECOD (1.6)
T [auth U]PF21143e7a5pU2 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF21143ECOD (1.6)
T [auth U]PF16399e7a5pU1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: PF16399ECOD (1.6)
T [auth U]PF21144e7a5pU5 A: a+b two layersX: Spliceosomal helicase Aquarius insert domain (From Topology)H: Spliceosomal helicase Aquarius insert domain (From Topology)T: Spliceosomal helicase Aquarius insert domainF: PF21144ECOD (1.6)
T [auth U]PF13086e7a5pU3 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF13086ECOD (1.6)
T [auth U]PF13087e7a5pU4 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF13087ECOD (1.6)
U [auth W]PF14580e7a5pW1 A: beta duplicates or obligate multimersX: Single-stranded right-handed beta-helixH: Leucine-rich repeats (From Topology)T: Leucine-rich repeatsF: PF14580ECOD (1.6)
V [auth X]PF00076e7a5pX1 A: a+b two layersX: Alpha-beta plaitsH: RNA-binding domain, RBD (From Topology)T: RNA-binding domain, RBDF: PF00076ECOD (1.6)
X [auth a]PF01423e7a5pa1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01423ECOD (1.6)
IA [auth l]PF01423e7a5pl1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01423ECOD (1.6)
Y [auth b]PF01423e7a5pb1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01423ECOD (1.6)
JA [auth m]PF01423e7a5pm1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01423ECOD (1.6)
KA [auth n]PF01423e7a5pn1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01423ECOD (1.6)
Z [auth c]PF01423e7a5pc1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01423ECOD (1.6)
AA [auth d]PF01423e7a5pd1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01423ECOD (1.6)
EA [auth h]PF01423e7a5ph1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01423ECOD (1.6)
BA [auth e]PF01423e7a5pe1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01423ECOD (1.6)
GA [auth j]PF01423e7a5pj1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01423ECOD (1.6)
CA [auth f]PF01423e7a5pf1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01423ECOD (1.6)
FA [auth i]PF01423e7a5pi1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01423ECOD (1.6)
DA [auth g]PF01423e7a5pg1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01423ECOD (1.6)
HA [auth k]PF01423e7a5pk1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01423ECOD (1.6)
LA [auth o]PF00076e7a5po1 A: a+b two layersX: Alpha-beta plaitsH: RNA-binding domain, RBD (From Topology)T: RNA-binding domain, RBDF: PF00076ECOD (1.6)
NA [auth q]PF02889e7a5pq2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF02889ECOD (1.6)
NA [auth q]F_UNCLASSIFIEDe7a5pq14 A: alpha arraysX: HTHH: HTHT: wingedF: F_UNCLASSIFIEDECOD (1.6)
NA [auth q]F_UNCLASSIFIEDe7a5pq3 A: alpha arraysX: HhH/H2THH: SAM-like subdomain in Sec63-like proteins (From Topology)T: SAM-like subdomain in Sec63-like proteinsF: F_UNCLASSIFIEDECOD (1.6)
NA [auth q]PF02889e7a5pq5 A: alpha arraysX: Sec63 N-terminal subdomain-like (From Topology)H: Sec63 N-terminal subdomain-like (From Topology)T: Sec63 N-terminal subdomain-likeF: PF02889ECOD (1.6)
NA [auth q]PF18149e7a5pq7 A: alpha arraysX: PWI domain-likeH: PWI domain (From Topology)T: PWI domainF: PF18149ECOD (1.6)
NA [auth q]PF21188e7a5pq4 A: alpha arraysX: PWI domain-likeH: Pre-mRNA-splicing helicase BRR2 plug domain (From Topology)T: Pre-mRNA-splicing helicase BRR2 plug domainF: PF21188ECOD (1.6)
NA [auth q]PF00270e7a5pq13 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00270ECOD (1.6)
NA [auth q]PF00271e7a5pq6 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00271ECOD (1.6)
NA [auth q]F_UNCLASSIFIEDe7a5pq9 A: extended segmentsX: Pre-mRNA-splicing helicase BRR2 NC-clamp (From Topology)H: Pre-mRNA-splicing helicase BRR2 NC-clamp (From Topology)T: Pre-mRNA-splicing helicase BRR2 NC-clampF: F_UNCLASSIFIEDECOD (1.6)
OA [auth r]PF07717e7a5pr1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF07717ECOD (1.6)
OA [auth r]PF04408,PF21010e7a5pr3 A: alpha arraysX: Sec63 N-terminal subdomain-like (From Topology)H: Sec63 N-terminal subdomain-like (From Topology)T: Sec63 N-terminal subdomain-likeF: PF04408,PF21010ECOD (1.6)
OA [auth r]PF00270e7a5pr4 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00270ECOD (1.6)
OA [auth r]PF00271e7a5pr2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00271ECOD (1.6)
PA [auth s]PF06246e7a5ps1 A: alpha bundlesX: Long alpha-hairpinH: ISY1 N-terminal domain-like (From Topology)T: ISY1 N-terminal domain-likeF: PF06246ECOD (1.6)
RA [auth v]PF02792e7a5pv1 A: a+b two layersX: Mago nashi protein (From Topology)H: Mago nashi protein (From Topology)T: Mago nashi proteinF: PF02792ECOD (1.6)
SA [auth w]PF00076e7a5pw1 A: a+b two layersX: Alpha-beta plaitsH: RNA-binding domain, RBD (From Topology)T: RNA-binding domain, RBDF: PF00076ECOD (1.6)
TA [auth x]PF06229e7a5px1 A: beta duplicates or obligate multimersX: beta-Trefoil (From Topology)H: beta-Trefoil (From Topology)T: beta-TrefoilF: PF06229ECOD (1.6)
UA [auth y]PF00270e7a5py2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00270ECOD (1.6)
UA [auth y]PF00271e7a5py1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00271ECOD (1.6)
VA [auth z]PF00160e7a5pz2 A: beta barrelsX: Cyclophilin-like (From Topology)H: Cyclophilin-like (From Topology)T: Cyclophilin-likeF: PF00160ECOD (1.6)
VA [auth z]PF00400e7a5pz1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 8-bladedF: PF00400ECOD (1.6)
E [auth A]PF01398,PF08084e7a5pA1 A: a+b three layersX: Cytidine deaminase-like (From Topology)H: Cytidine deaminase-like (From Topology)T: Cytidine deaminase-likeF: PF01398,PF08084ECOD (1.6)
E [auth A]PF12134e7a5pA2 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF12134ECOD (1.6)
G [auth E]PF00400e7a5pE1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
N [auth M]PF13181Tetratricopeptide repeat (TPR_8)Tetratricopeptide repeat- Repeat
O [auth N]PF08231SYF2 splicing factor (SYF2)SYF2 splicing factorProteins in this family are involved in cell cycle progression and pre-mRNA splicing [1] [2].Domain
Q [auth P]PF00076RNA recognition motif (RRM_1)RNA recognition motifThe RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and pro ...The RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins (Swiss:P05455) have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins (Swiss:P05455) are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease.
Domain
R [auth S]PF08312cwf21 domain (cwf21)cwf21 domainThe cwf21 family is involved in mRNA splicing. It has been isolated as a subcomplex of the splicosome in Schizosaccharomyces pombe [1]. The function of the cwf21 domain is to bind directly to the spliceosomal protein Prp8. Mutations in the cwf21 dom ...The cwf21 family is involved in mRNA splicing. It has been isolated as a subcomplex of the splicosome in Schizosaccharomyces pombe [1]. The function of the cwf21 domain is to bind directly to the spliceosomal protein Prp8. Mutations in the cwf21 domain prevent Prp8 from binding [2]. The structure of this domain has recently been solved which shows this domain to be composed of two alpha helices.
Domain
S [auth T]PF02854MIF4G domain (MIF4G)MIF4G domain- Repeat
T [auth U]PF21144Intron-binding protein aquarius insert domain (Aquarius_N_3rd)Intron-binding protein aquarius insert domainThis entry represents the insert domain of intron-binding protein aquarius, a splicing factor which links excision of introns from pre-mRNA with snoRP assembly [1,2].Domain
T [auth U]PF21143Intron-binding protein aquarius, beta-barrel (Aquarius_N_2nd)Intron-binding protein aquarius, beta-barrelThis entry represents the beta-barrel domain found at the N-terminal of intron-binding protein aquarius, a splicing factor which links excision of introns from pre-mRNA with snoRP assembly [1,2].Domain
T [auth U]PF13086AAA domain (AAA_11)AAA domainThis family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins.Domain
T [auth U]PF13087AAA domain (AAA_12)AAA domainThis family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins.Domain
T [auth U]PF16399Intron-binding protein aquarius N-terminal (Aquarius_N_1st)Intron-binding protein aquarius N-terminal- Repeat
U [auth W]PF14580Leucine-rich repeat (LRR_9)Leucine-rich repeat- Repeat
V [auth X]PF00076RNA recognition motif (RRM_1)RNA recognition motifThe RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and pro ...The RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins (Swiss:P05455) have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins (Swiss:P05455) are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease.
Domain
IA [auth l],
X [auth a]		PF01423LSM domain (LSM)LSM domainThe LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) i ...The LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) in common, which assemble around the Sm site present in four of the major spliceosomal small nuclear RNAs. The U6 snRNP binds to the LSM (Like Sm) proteins [3]. Sm proteins are also found in archaebacteria, which do not have any splicing apparatus suggesting a more general role for Sm proteins. All Sm proteins contain a common sequence motif in two segments, Sm1 and Sm2, separated by a short variable linker. This family also includes the bacterial Hfq (host factor Q) proteins. Hfq are also RNA-binding proteins, that form hexameric rings.
Domain
JA [auth m],
Y [auth b]		PF01423LSM domain (LSM)LSM domainThe LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) i ...The LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) in common, which assemble around the Sm site present in four of the major spliceosomal small nuclear RNAs. The U6 snRNP binds to the LSM (Like Sm) proteins [3]. Sm proteins are also found in archaebacteria, which do not have any splicing apparatus suggesting a more general role for Sm proteins. All Sm proteins contain a common sequence motif in two segments, Sm1 and Sm2, separated by a short variable linker. This family also includes the bacterial Hfq (host factor Q) proteins. Hfq are also RNA-binding proteins, that form hexameric rings.
Domain
KA [auth n],
Z [auth c]		PF01423LSM domain (LSM)LSM domainThe LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) i ...The LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) in common, which assemble around the Sm site present in four of the major spliceosomal small nuclear RNAs. The U6 snRNP binds to the LSM (Like Sm) proteins [3]. Sm proteins are also found in archaebacteria, which do not have any splicing apparatus suggesting a more general role for Sm proteins. All Sm proteins contain a common sequence motif in two segments, Sm1 and Sm2, separated by a short variable linker. This family also includes the bacterial Hfq (host factor Q) proteins. Hfq are also RNA-binding proteins, that form hexameric rings.
Domain
AA [auth d],
EA [auth h]		PF01423LSM domain (LSM)LSM domainThe LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) i ...The LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) in common, which assemble around the Sm site present in four of the major spliceosomal small nuclear RNAs. The U6 snRNP binds to the LSM (Like Sm) proteins [3]. Sm proteins are also found in archaebacteria, which do not have any splicing apparatus suggesting a more general role for Sm proteins. All Sm proteins contain a common sequence motif in two segments, Sm1 and Sm2, separated by a short variable linker. This family also includes the bacterial Hfq (host factor Q) proteins. Hfq are also RNA-binding proteins, that form hexameric rings.
Domain
BA [auth e],
GA [auth j]		PF01423LSM domain (LSM)LSM domainThe LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) i ...The LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) in common, which assemble around the Sm site present in four of the major spliceosomal small nuclear RNAs. The U6 snRNP binds to the LSM (Like Sm) proteins [3]. Sm proteins are also found in archaebacteria, which do not have any splicing apparatus suggesting a more general role for Sm proteins. All Sm proteins contain a common sequence motif in two segments, Sm1 and Sm2, separated by a short variable linker. This family also includes the bacterial Hfq (host factor Q) proteins. Hfq are also RNA-binding proteins, that form hexameric rings.
Domain
CA [auth f],
FA [auth i]		PF01423LSM domain (LSM)LSM domainThe LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) i ...The LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) in common, which assemble around the Sm site present in four of the major spliceosomal small nuclear RNAs. The U6 snRNP binds to the LSM (Like Sm) proteins [3]. Sm proteins are also found in archaebacteria, which do not have any splicing apparatus suggesting a more general role for Sm proteins. All Sm proteins contain a common sequence motif in two segments, Sm1 and Sm2, separated by a short variable linker. This family also includes the bacterial Hfq (host factor Q) proteins. Hfq are also RNA-binding proteins, that form hexameric rings.
Domain
DA [auth g],
HA [auth k]		PF01423LSM domain (LSM)LSM domainThe LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) i ...The LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) in common, which assemble around the Sm site present in four of the major spliceosomal small nuclear RNAs. The U6 snRNP binds to the LSM (Like Sm) proteins [3]. Sm proteins are also found in archaebacteria, which do not have any splicing apparatus suggesting a more general role for Sm proteins. All Sm proteins contain a common sequence motif in two segments, Sm1 and Sm2, separated by a short variable linker. This family also includes the bacterial Hfq (host factor Q) proteins. Hfq are also RNA-binding proteins, that form hexameric rings.
Domain
LA [auth o]PF00076RNA recognition motif (RRM_1)RNA recognition motifThe RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and pro ...The RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins (Swiss:P05455) have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins (Swiss:P05455) are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease.
Domain
NA [auth q]PF02889Sec63 Brl domain (Sec63)Sec63 Brl domain- Family
NA [auth q]PF21188Pre-mRNA-splicing helicase BRR2 plug domain (BRR2_plug)Pre-mRNA-splicing helicase BRR2 plug domainThis entry represents the Plug domain from the Brr2 RNA helicase protein. The Brr2 helicase provides the key remodelling activity for spliceosome catalytic activation, during which it disrupts the U4/U6 di-snRNP (small nuclear RNA protein) [2]. The p ...This entry represents the Plug domain from the Brr2 RNA helicase protein. The Brr2 helicase provides the key remodelling activity for spliceosome catalytic activation, during which it disrupts the U4/U6 di-snRNP (small nuclear RNA protein) [2]. The plug domain is a small alpha helical bundle domain found near the N-terminus of the Brr2 protein [2].
Domain
NA [auth q]PF00270DEAD/DEAH box helicase (DEAD)DEAD/DEAH box helicaseMembers of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome ...Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Domain
NA [auth q]PF00271Helicase conserved C-terminal domain (Helicase_C)Helicase conserved C-terminal domainThe Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase.Domain
OA [auth r]PF04408Helicase associated domain (HA2), winged-helix (HA2_N)Helicase associated domain (HA2), winged-helixThe helicase associated domain (HA2) has an all alpha-helical fold and consists of a N-terminal winged-helix (WH) domain and a C-terminal degenerate helical-bundle domain, referred to as the ratchet-like domain [1,2,3]. These domains collaborate wit ...The helicase associated domain (HA2) has an all alpha-helical fold and consists of a N-terminal winged-helix (WH) domain and a C-terminal degenerate helical-bundle domain, referred to as the ratchet-like domain [1,2,3]. These domains collaborate with RecA domains at the N-terminal in completing an RNA binding channel to allow the helicases to keep a stable grip on the RNA [3] and assure its correct function. This entry represents the WH domain, which connects the N- (RecA domains) and C-terminal domains (ratchet-like and OB-fold) of helicases.
Domain
OA [auth r]PF07717Oligonucleotide/oligosaccharide-binding (OB)-fold (OB_NTP_bind)Oligonucleotide/oligosaccharide-binding (OB)-foldThis family is found towards the C-terminus of the DEAD-box helicases (Pfam:PF00270). In these helicases it is apparently always found in association with Pfam:PF04408. There do seem to be a couple of instances where it occurs by itself - e.g. Swiss: ...This family is found towards the C-terminus of the DEAD-box helicases (Pfam:PF00270). In these helicases it is apparently always found in association with Pfam:PF04408. There do seem to be a couple of instances where it occurs by itself - e.g. Swiss:Q84VZ2. The structure PDB:3i4u adopts an OB-fold. helicases (Pfam:PF00270). In these helicases it is apparently always found in association with Pfam:PF04408. This C-terminal domain of the yeast helicase contains an oligonucleotide/oligosaccharide-binding (OB)-fold which seems to be placed at the entrance of the putative nucleic acid cavity. It also constitutes the binding site for the G-patch-containing domain of Pfa1p. When found on DEAH/RHA helicases, this domain is central to the regulation of the helicase activity through its binding of both RNA and G-patch domain proteins [1].
Domain
OA [auth r]PF00270DEAD/DEAH box helicase (DEAD)DEAD/DEAH box helicaseMembers of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome ...Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Domain
OA [auth r]PF00271Helicase conserved C-terminal domain (Helicase_C)Helicase conserved C-terminal domainThe Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase.Domain
OA [auth r]PF21010Helicase associated domain (HA2), ratchet-like (HA2_C)Helicase associated domain (HA2), ratchet-likeThe helicase associated domain (HA2) has an all alpha-helical fold and consists of a N-terminal winged-helix (WH) domain (Pfam:PF04408) and a C-terminal degenerate helical-bundle domain, referred to as the ratchet-like domain [1,2,3]. These domains c ...The helicase associated domain (HA2) has an all alpha-helical fold and consists of a N-terminal winged-helix (WH) domain (Pfam:PF04408) and a C-terminal degenerate helical-bundle domain, referred to as the ratchet-like domain [1,2,3]. These domains collaborate with the RecA domains at the N-terminal in completing an RNA binding channel to allow the helicases to keep a stable grip on the RNA [3]. This entry represents the ratchet-like domain, which may be important for RNA translocation [1,2].
Domain
PA [auth s]PF06246Isy1-like splicing family (Isy1)Isy1-like splicing family- Family
QA [auth u]PF04502Saf4/Yju2 protein (Saf4_Yju2)Saf4/Yju2 protein- Family
RA [auth v]PF02792Mago nashi protein (Mago_nashi)Mago nashi protein- Family
SA [auth w]PF00076RNA recognition motif (RRM_1)RNA recognition motifThe RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and pro ...The RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins (Swiss:P05455) have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins (Swiss:P05455) are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease.
Domain
TA [auth x]PF06229FRG1-like domain (FRG1)FRG1-like domainThe human FRG1 gene maps to human chromosome 4q35 and has been identified as a candidate for facioscapulohumeral muscular dystrophy. Currently, the function of FRG1 is unknown [1].Domain
UA [auth y]PF00270DEAD/DEAH box helicase (DEAD)DEAD/DEAH box helicaseMembers of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome ...Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Domain
UA [auth y]PF00271Helicase conserved C-terminal domain (Helicase_C)Helicase conserved C-terminal domainThe Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase.Domain
VA [auth z]PF00160Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD (Pro_isomerase)Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLDThe peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyse peptidyl-prolyl isomerisation during which the peptide bond pr ...The peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyse peptidyl-prolyl isomerisation during which the peptide bond preceding proline (the peptidyl-prolyl bond) is stabilised in the cis conformation. Mammalian cyclophilin A (CypA) is a major cellular target for the immunosuppressive drug cyclosporin A (CsA). Other roles for cyclophilins may include chaperone and cell signalling function [1].
Domain
VA [auth z]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
E [auth A]PF12134PRP8 domain IV core (PRP8_domainIV)PRP8 domain IV coreThis domain is found in eukaryotes, and is about 20 amino acids in length. It is found associated with Pfam:PF10597, Pfam:PF10596, Pfam:PF10598, Pfam:PF08083, Pfam:PF08082, Pfam:PF01398, Pfam:PF08084. There is a conserved LILR sequence motif. The dom ...This domain is found in eukaryotes, and is about 20 amino acids in length. It is found associated with Pfam:PF10597, Pfam:PF10596, Pfam:PF10598, Pfam:PF08083, Pfam:PF08082, Pfam:PF01398, Pfam:PF08084. There is a conserved LILR sequence motif. The domain is a selenomethionine domain in a subunit of the spliceosome. The function of PRP8 domain IV is believed to be interaction with the splicosomal core.
Domain
E [auth A]PF01398JAB1/Mov34/MPN/PAD-1 ubiquitin protease (JAB)JAB1/Mov34/MPN/PAD-1 ubiquitin protease- Family
E [auth A]PF08084PROCT (NUC072) domain (PROCT)PROCT (NUC072) domainThe PROCT domain is the C-terminal domain in pre-mRNA splicing factors of PRO8 family [1].Domain
F [auth C]PF02731SKIP/SNW domain (SKIP_SNW)SKIP/SNW domain- Family
G [auth E]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
H [auth G],
I [auth H],
J [auth I],
K [auth J]		PF08606Prp19/Pso4-like (Prp19)Prp19/Pso4-likeThis regions is found specifically in PRP19-like protein. The region represented by this family covers the sequence implicated in self-interaction and a coiled-coiled motif [1]. PRP19-like proteins form an oligomer that is necessary ...This regions is found specifically in PRP19-like protein. The region represented by this family covers the sequence implicated in self-interaction and a coiled-coiled motif [1]. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [1].
Domain
H [auth G],
I [auth H],
J [auth I],
K [auth J]		PF04564U-box domain (U-box)U-box domainThe U-box is a domain of ~70 amino acids that is present in proteins from yeast to human. It consists of the beta-beta-alpha-beta-alpha- fold typical of U-box and RING domains. The central alpha helix is flanked by two prominent surface-exposed loop ...The U-box is a domain of ~70 amino acids that is present in proteins from yeast to human. It consists of the beta-beta-alpha-beta-alpha- fold typical of U-box and RING domains. The central alpha helix is flanked by two prominent surface-exposed loop regions. This domain is one class of E3 ligases, involved in the ubiquitination process [1-3]. This domain is related to the Ring finger Pfam:PF00097 but lacks the zinc binding residues [4].
Domain
L [auth K]PF05700Breast carcinoma amplified sequence 2 (BCAS2) (BCAS2)Breast carcinoma amplified sequence 2 (BCAS2)- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 2]U2 snRNA---
M [auth L]Cell division cycle 5-like protein
N [auth M]Pre-mRNA-splicing factor SYF1-
O [auth N]Pre-mRNA-splicing factor SYF2
P [auth O]Crooked neck-like protein 1
Q [auth P]Pre-mRNA-splicing factor RBM22
R [auth S]Serine/arginine repetitive matrix protein 2
S [auth T]Pre-mRNA-splicing factor CWC22 homolog
T [auth U]Intron-binding protein aquarius
U [auth W]U2 small nuclear ribonucleoprotein A'
V [auth X]U2 small nuclear ribonucleoprotein B''
B [auth 5]U5 snRNA---
W [auth Y]pre-mRNA---
IA [auth l],
X [auth a]		Small nuclear ribonucleoprotein Sm D3
JA [auth m],
Y [auth b]		Small nuclear ribonucleoprotein-associated proteins B and B'
KA [auth n],
Z [auth c]		Small nuclear ribonucleoprotein Sm D1
AA [auth d],
EA [auth h]		Small nuclear ribonucleoprotein Sm D2
BA [auth e],
GA [auth j]		Small nuclear ribonucleoprotein E
CA [auth f],
FA [auth i]		Small nuclear ribonucleoprotein F
DA [auth g],
HA [auth k]		Small nuclear ribonucleoprotein G
LA [auth o]Peptidyl-prolyl cis-trans isomerase E
MA [auth p]WD repeat-containing protein 70 -
C [auth 6]U6 snRNA---
NA [auth q]U5 small nuclear ribonucleoprotein 200 kDa helicase
OA [auth r]Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
PA [auth s]Pre-mRNA-splicing factor ISY1 homolog
QA [auth u]Splicing factor YJU2
RA [auth v]Protein mago nashi homolog
SA [auth w]RNA-binding protein 8A
TA [auth x]Protein FRG1
UA [auth y]Eukaryotic initiation factor 4A-III
VA [auth z]Peptidylprolyl isomerase domain and WD repeat-containing protein 1
D [auth 8]UNKNOWN---
E [auth A]Pre-mRNA-processing-splicing factor 8
F [auth C]SNW domain-containing protein 1
G [auth E]Pre-mRNA-processing factor 17
H [auth G],
I [auth H],
J [auth I],
K [auth J]		Pre-mRNA-processing factor 19
L [auth K]Pre-mRNA-splicing factor SPF27-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
M [auth L]IPR047240Pre-mRNA splicing factor component CDC5L/Cef1, second SANT/myb-like domainDomain
M [auth L]IPR017930Myb domainDomain
M [auth L]IPR009057Homeobox-like domain superfamilyHomologous Superfamily
M [auth L]IPR047242Pre-mRNA splicing factor component CDC5L/Cef1Family
M [auth L]IPR001005SANT/Myb domainDomain
M [auth L]IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1, C-terminalDomain
N [auth M]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
N [auth M]IPR003107HAT (Half-A-TPR) repeatRepeat
N [auth M]IPR045075Pre-mRNA-splicing factor Syf1-likeFamily
N [auth M]IPR019734Tetratricopeptide repeatRepeat
O [auth N]IPR013260mRNA splicing factor SYF2Family
P [auth O]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
P [auth O]IPR003107HAT (Half-A-TPR) repeatRepeat
P [auth O]IPR045075Pre-mRNA-splicing factor Syf1-likeFamily
Q [auth P]IPR036855Zinc finger, CCCH-type superfamilyHomologous Superfamily
Q [auth P]IPR039171Pre-mRNA-splicing factor Cwc2/Slt11Family
Q [auth P]IPR000504RNA recognition motif domainDomain
Q [auth P]IPR000571Zinc finger, CCCH-typeDomain
Q [auth P]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
Q [auth P]IPR048995STL11/RBM22-like, N-terminal domainDomain
Q [auth P]IPR035979RNA-binding domain superfamilyHomologous Superfamily
R [auth S]IPR047490Serine/arginine repetitive matrix protein 2, cwf21 domainDomain
R [auth S]IPR013170mRNA splicing factor Cwf21 domainDomain
R [auth S]IPR024945Spt5 C-terminal domainDomain
S [auth T]IPR016024Armadillo-type foldHomologous Superfamily
S [auth T]IPR003891Initiation factor eIF-4 gamma, MA3Domain
S [auth T]IPR003890MIF4G-like, type 3Domain
T [auth U]IPR048966RNA helicase aquarius, beta-barrelDomain
T [auth U]IPR048967RNA helicase aquarius, insertion domainDomain
T [auth U]IPR041677DNA2/NAM7 helicase, helicase domainDomain
T [auth U]IPR026300CWF11 familyFamily
T [auth U]IPR045055DNA2/NAM7-like helicaseFamily
T [auth U]IPR032174RNA helicase aquarius, N-terminal domainDomain
T [auth U]IPR041679DNA2/NAM7 helicase-like, C-terminalDomain
T [auth U]IPR047187Upf1-like, C-terminal helicase domainDomain
T [auth U]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
U [auth W]IPR001611Leucine-rich repeatRepeat
U [auth W]IPR003603U2A'/phosphoprotein 32 family A, C-terminalDomain
U [auth W]IPR032675Leucine-rich repeat domain superfamilyHomologous Superfamily
V [auth X]IPR034562U2 small nuclear ribonucleoprotein B'', RNA recognition motif 2Domain
V [auth X]IPR000504RNA recognition motif domainDomain
V [auth X]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
V [auth X]IPR035979RNA-binding domain superfamilyHomologous Superfamily
V [auth X]IPR034564U2 small nuclear ribonucleoprotein B'', RNA recognition motif 1Domain
IA [auth l],
X [auth a]		IPR027141Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3Family
IA [auth l],
X [auth a]		IPR034099Small nuclear ribonucleoprotein Sm D3Family
IA [auth l],
X [auth a]		IPR001163Sm domain, eukaryotic/archaea-typeDomain
IA [auth l],
X [auth a]		IPR047575Sm domainDomain
IA [auth l],
X [auth a]		IPR010920LSM domain superfamilyHomologous Superfamily
JA [auth m],
Y [auth b]		IPR001163Sm domain, eukaryotic/archaea-typeDomain
JA [auth m],
Y [auth b]		IPR017131Small ribonucleoprotein associated, SmB/SmNFamily
JA [auth m],
Y [auth b]		IPR047575Sm domainDomain
JA [auth m],
Y [auth b]		IPR010920LSM domain superfamilyHomologous Superfamily
KA [auth n],
Z [auth c]		IPR027141Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3Family
KA [auth n],
Z [auth c]		IPR034102Small nuclear ribonucleoprotein D1Domain
KA [auth n],
Z [auth c]		IPR001163Sm domain, eukaryotic/archaea-typeDomain
KA [auth n],
Z [auth c]		IPR047575Sm domainDomain
KA [auth n],
Z [auth c]		IPR010920LSM domain superfamilyHomologous Superfamily
AA [auth d],
EA [auth h]		IPR001163Sm domain, eukaryotic/archaea-typeDomain
AA [auth d],
EA [auth h]		IPR047575Sm domainDomain
AA [auth d],
EA [auth h]		IPR027248Small nuclear ribonucleoprotein Sm D2Family
AA [auth d],
EA [auth h]		IPR010920LSM domain superfamilyHomologous Superfamily
BA [auth e],
GA [auth j]		IPR027078Small nuclear ribonucleoprotein EFamily
BA [auth e],
GA [auth j]		IPR001163Sm domain, eukaryotic/archaea-typeDomain
BA [auth e],
GA [auth j]		IPR047575Sm domainDomain
BA [auth e],
GA [auth j]		IPR010920LSM domain superfamilyHomologous Superfamily
CA [auth f],
FA [auth i]		IPR016487Sm-like protein Lsm6/SmFFamily
CA [auth f],
FA [auth i]		IPR034100Small nuclear ribonucleoprotein FFamily
CA [auth f],
FA [auth i]		IPR001163Sm domain, eukaryotic/archaea-typeDomain
CA [auth f],
FA [auth i]		IPR047575Sm domainDomain
CA [auth f],
FA [auth i]		IPR010920LSM domain superfamilyHomologous Superfamily
DA [auth g],
HA [auth k]		IPR044641Sm-like protein Lsm7/SmGFamily
DA [auth g],
HA [auth k]		IPR034098Small nuclear ribonucleoprotein GFamily
DA [auth g],
HA [auth k]		IPR001163Sm domain, eukaryotic/archaea-typeDomain
DA [auth g],
HA [auth k]		IPR047575Sm domainDomain
DA [auth g],
HA [auth k]		IPR010920LSM domain superfamilyHomologous Superfamily
LA [auth o]IPR029000Cyclophilin-like domain superfamilyHomologous Superfamily
LA [auth o]IPR002130Cyclophilin-type peptidyl-prolyl cis-trans isomerase domainDomain
LA [auth o]IPR034168Peptidyl-prolyl cis-trans isomerase E, RNA recognition motifDomain
LA [auth o]IPR016304Peptidyl-prolyl cis-trans isomerase EFamily
LA [auth o]IPR020892Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved siteConserved Site
LA [auth o]IPR000504RNA recognition motif domainDomain
LA [auth o]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
LA [auth o]IPR035979RNA-binding domain superfamilyHomologous Superfamily
MA [auth p]IPR001680WD40 repeatRepeat
MA [auth p]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
MA [auth p]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
NA [auth q]IPR048863Pre-mRNA-splicing helicase BRR2-like, plug domainDomain
NA [auth q]IPR041094Brr2, N-terminal helicase PWI domainDomain
NA [auth q]IPR004179Sec63 domainDomain
NA [auth q]IPR014756Immunoglobulin E-setHomologous Superfamily
NA [auth q]IPR011545DEAD/DEAH box helicase domainDomain
NA [auth q]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
NA [auth q]IPR001650Helicase, C-terminal domain-likeDomain
NA [auth q]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
NA [auth q]IPR014001Helicase superfamily 1/2, ATP-binding domainDomain
NA [auth q]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
NA [auth q]IPR035892C2 domain superfamilyHomologous Superfamily
OA [auth r]IPR011709DEAD-box helicase, OB foldDomain
OA [auth r]IPR001650Helicase, C-terminal domain-likeDomain
OA [auth r]IPR014001Helicase superfamily 1/2, ATP-binding domainDomain
OA [auth r]IPR048333Helicase associated domain (HA2), winged-helix domainDomain
OA [auth r]IPR002464DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved siteConserved Site
OA [auth r]IPR007502Helicase-associated domainDomain
OA [auth r]IPR011545DEAD/DEAH box helicase domainDomain
OA [auth r]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
PA [auth s]IPR029012Helix hairpin bin domain superfamilyHomologous Superfamily
PA [auth s]IPR009360Pre-mRNA-splicing factor Isy1Family
PA [auth s]IPR037200Pre-mRNA-splicing factor Isy1 superfamilyHomologous Superfamily
QA [auth u]IPR043701Splicing factor Yju2Family
QA [auth u]IPR007590Saf4/Yju2 proteinFamily
RA [auth v]IPR004023Mago nashi proteinFamily
RA [auth v]IPR036605Mago nashi superfamilyHomologous Superfamily
SA [auth w]IPR033744RBM8, RNA recognition motifDomain
SA [auth w]IPR000504RNA recognition motif domainDomain
SA [auth w]IPR008111RNA-binding motif protein 8Family
SA [auth w]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
SA [auth w]IPR035979RNA-binding domain superfamilyHomologous Superfamily
TA [auth x]IPR008999Actin-crosslinkingHomologous Superfamily
TA [auth x]IPR010414Protein FRG1Family
UA [auth y]IPR000629ATP-dependent RNA helicase DEAD-box, conserved siteConserved Site
UA [auth y]IPR014014RNA helicase, DEAD-box type, Q motifDomain
UA [auth y]IPR011545DEAD/DEAH box helicase domainDomain
UA [auth y]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
UA [auth y]IPR001650Helicase, C-terminal domain-likeDomain
UA [auth y]IPR014001Helicase superfamily 1/2, ATP-binding domainDomain
VA [auth z]IPR029000Cyclophilin-like domain superfamilyHomologous Superfamily
VA [auth z]IPR002130Cyclophilin-type peptidyl-prolyl cis-trans isomerase domainDomain
VA [auth z]IPR044666Cyclophilin-type peptidyl-prolyl cis-trans isomerase, cyclophilin A-likeFamily
VA [auth z]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
VA [auth z]IPR001680WD40 repeatRepeat
VA [auth z]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
E [auth A]IPR012984PROCT domainDomain
E [auth A]IPR012591PRO8NT domainDomain
E [auth A]IPR019580Pre-mRNA-processing-splicing factor 8, U6-snRNA-bindingDomain
E [auth A]IPR027652Pre-mRNA-processing-splicing factor 8Family
E [auth A]IPR043172Prp8 RNase domain IV, palm regionHomologous Superfamily
E [auth A]IPR012592PROCN domainDomain
E [auth A]IPR012337Ribonuclease H-like superfamilyHomologous Superfamily
E [auth A]IPR043173Prp8 RNase domain IV, fingers regionHomologous Superfamily
E [auth A]IPR021983PRP8 domain IV coreDomain
E [auth A]IPR019581Pre-mRNA-processing-splicing factor 8, U5-snRNA-bindingDomain
E [auth A]IPR037518MPN domainDomain
E [auth A]IPR019582RNA recognition motif, spliceosomal PrP8Domain
E [auth A]IPR042516Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding domain superfamilyHomologous Superfamily
E [auth A]IPR000555JAB1/MPN/MOV34 metalloenzyme domainDomain
F [auth C]IPR017862SKI-interacting protein, SKIPFamily
F [auth C]IPR004015SKI-interacting protein SKIP, SNW domainDomain
G [auth E]IPR019775WD40 repeat, conserved siteConserved Site
G [auth E]IPR032847Pre-mRNA-processing factor 17Family
G [auth E]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
G [auth E]IPR001680WD40 repeatRepeat
G [auth E]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
H [auth G],
I [auth H],
J [auth I],
K [auth J]		IPR013915Pre-mRNA-splicing factor 19Domain
H [auth G],
I [auth H],
J [auth I],
K [auth J]		IPR019775WD40 repeat, conserved siteConserved Site
H [auth G],
I [auth H],
J [auth I],
K [auth J]		IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
H [auth G],
I [auth H],
J [auth I],
K [auth J]		IPR038959Pre-mRNA-processing factor 19Family
H [auth G],
I [auth H],
J [auth I],
K [auth J]		IPR003613U-box domainDomain
H [auth G],
I [auth H],
J [auth I],
K [auth J]		IPR013083Zinc finger, RING/FYVE/PHD-typeHomologous Superfamily
H [auth G],
I [auth H],
J [auth I],
K [auth J]		IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
H [auth G],
I [auth H],
J [auth I],
K [auth J]		IPR001680WD40 repeatRepeat
H [auth G],
I [auth H],
J [auth I],
K [auth J]		IPR020472G-protein beta WD-40 repeatRepeat
L [auth K]IPR008409Pre-mRNA-splicing factor SPF27Family

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
M [auth L]Pharos:  Q99459
N [auth M]Pharos:  Q9HCS7
O [auth N]Pharos:  O95926
P [auth O]Pharos:  Q9BZJ0
Q [auth P]Pharos:  Q9NW64
R [auth S]Pharos:  Q9UQ35
S [auth T]Pharos:  Q9HCG8
T [auth U]Pharos:  O60306
V [auth X]Pharos:  P08579
IA [auth l],
X [auth a]		Pharos:  P62318
JA [auth m],
Y [auth b]		Pharos:  P14678
KA [auth n],
Z [auth c]		Pharos:  P62314
AA [auth d],
EA [auth h]		Pharos:  P62316
BA [auth e],
GA [auth j]		Pharos:  P62304
CA [auth f],
FA [auth i]		Pharos:  P62306
DA [auth g],
HA [auth k]		Pharos:  P62308
LA [auth o]Pharos:  Q9UNP9
MA [auth p]Pharos:  Q9NW82
NA [auth q]Pharos:  O75643
OA [auth r]Pharos:  Q92620
QA [auth u]Pharos:  Q9BW85
RA [auth v]Pharos:  P61326
SA [auth w]Pharos:  Q9Y5S9
TA [auth x]Pharos:  Q14331
UA [auth y]Pharos:  P38919
VA [auth z]Pharos:  Q96BP3
E [auth A]Pharos:  Q6P2Q9
F [auth C]Pharos:  Q13573
G [auth E]Pharos:  O60508
H [auth G],
I [auth H],
J [auth I],
K [auth J]		Pharos:  Q9UMS4
L [auth K]Pharos:  O75934