6ZW4 | pdb_00006zw4

C14 symmetry: Bacterial Vipp1 and PspA are members of the ancient ESCRT-III membrane-remodeling superfamily.

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
ZB [auth AC]	Glyco_transf_41	e6zw4AC1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Glyco_transf_41	ECOD (v295)
ZA [auth AB]	MIF	e6zw4AB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
Z [auth AA]	MIF	e6zw4AA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
YB [auth ZB]	MIF	e6zw4ZB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
YA [auth ZA]	MIF	e6zw4ZA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
Y [auth Z]	Trypsin	e6zw4Z1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: Trypsin	ECOD (v295)
XB [auth YB]	MIF	e6zw4YB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
XA [auth YA]	MIF	e6zw4YA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
X [auth Y]	Glyco_transf_41	e6zw4Y1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Glyco_transf_41	ECOD (v295)
WB [auth XB]	MIF	e6zw4XB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
WA [auth XA]	Trypsin	e6zw4XA1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: Trypsin	ECOD (v295)
W [auth X]	MIF	e6zw4X1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
VB [auth WB]	MIF	e6zw4WB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
VA [auth WA]	Glyco_transf_41	e6zw4WA1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Glyco_transf_41	ECOD (v295)
V [auth W]	MIF	e6zw4W1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
UB [auth VB]	Trypsin	e6zw4VB1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: Trypsin	ECOD (v295)
UA [auth VA]	MIF	e6zw4VA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
U [auth V]	MIF	e6zw4V1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
TB [auth UB]	Glyco_transf_41	e6zw4UB1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Glyco_transf_41	ECOD (v295)
TA [auth UA]	MIF	e6zw4UA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
T	MIF	e6zw4T1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
SB [auth TB]	MIF	e6zw4TB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
SA [auth TA]	MIF	e6zw4TA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
S	Trypsin	e6zw4S1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: Trypsin	ECOD (v295)
RB [auth SB]	MIF	e6zw4SB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
RA [auth SA]	MIF	e6zw4SA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
R	Glyco_transf_41	e6zw4R1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Glyco_transf_41	ECOD (v295)
QB [auth RB]	MIF	e6zw4RB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
QA [auth RA]	Trypsin	e6zw4RA1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: Trypsin	ECOD (v295)
Q	MIF	e6zw4Q1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
PB [auth QB]	MIF	e6zw4QB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
PA [auth QA]	Glyco_transf_41	e6zw4QA1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Glyco_transf_41	ECOD (v295)
P	MIF	e6zw4P1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
OB [auth PB]	Trypsin	e6zw4PB1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: Trypsin	ECOD (v295)
OA [auth PA]	MIF	e6zw4PA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
O	MIF	e6zw4O1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
NB [auth OB]	Glyco_transf_41	e6zw4OB1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Glyco_transf_41	ECOD (v295)
NA [auth OA]	MIF	e6zw4OA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
N	MIF	e6zw4N1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
MB [auth NB]	MIF	e6zw4NB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
MA [auth NA]	MIF	e6zw4NA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
M	Trypsin	e6zw4M1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: Trypsin	ECOD (v295)
LB [auth MB]	MIF	e6zw4MB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
LA [auth MA]	MIF	e6zw4MA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
L	Glyco_transf_41	e6zw4L1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Glyco_transf_41	ECOD (v295)
KB [auth LB]	MIF	e6zw4LB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
KA [auth LA]	Trypsin	e6zw4LA1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: Trypsin	ECOD (v295)
K	MIF	e6zw4K1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
JB [auth KB]	MIF	e6zw4KB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
JA [auth KA]	Glyco_transf_41	e6zw4KA1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Glyco_transf_41	ECOD (v295)
J	MIF	e6zw4J1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
IB [auth JB]	Trypsin	e6zw4JB1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: Trypsin	ECOD (v295)
IA [auth JA]	MIF	e6zw4JA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
I	MIF	e6zw4I1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
HB [auth IB]	Glyco_transf_41	e6zw4IB1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Glyco_transf_41	ECOD (v295)
HA [auth IA]	MIF	e6zw4IA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
H	MIF	e6zw4H1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
GB [auth HB]	MIF	e6zw4HB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
GA [auth HA]	MIF	e6zw4HA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
G	Trypsin	e6zw4G1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: Trypsin	ECOD (v295)
FC [auth GC]	Glyco_transf_41	e6zw4GC1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Glyco_transf_41	ECOD (v295)
FB [auth GB]	MIF	e6zw4GB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
FA [auth GA]	MIF	e6zw4GA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
F	Glyco_transf_41	e6zw4F1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Glyco_transf_41	ECOD (v295)
EC [auth FC]	MIF	e6zw4FC1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
EB [auth FB]	MIF	e6zw4FB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
EA [auth FA]	Trypsin	e6zw4FA1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: Trypsin	ECOD (v295)
E	MIF	e6zw4E1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
DC [auth EC]	MIF	e6zw4EC1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
DB [auth EB]	MIF	e6zw4EB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
DA [auth EA]	Glyco_transf_41	e6zw4EA1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Glyco_transf_41	ECOD (v295)
D	MIF	e6zw4D1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
CC [auth DC]	MIF	e6zw4DC1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
CB [auth DB]	Trypsin	e6zw4DB1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: Trypsin	ECOD (v295)
CA [auth DA]	MIF	e6zw4DA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
C	MIF	e6zw4C1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
BC [auth CC]	MIF	e6zw4CC1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
BB [auth CB]	Glyco_transf_41	e6zw4CB1	A: alpha arrays	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Glyco_transf_41	ECOD (v295)
BA [auth CA]	MIF	e6zw4CA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
B	MIF	e6zw4B1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
AC [auth BC]	Trypsin	e6zw4BC1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: Trypsin	ECOD (v295)
AB [auth BB]	MIF	e6zw4BB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
AA [auth BA]	MIF	e6zw4BA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
A	Trypsin	e6zw4A1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: Trypsin	ECOD (v295)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, AA [auth BA], AB [auth BB], AC [auth BC], B, A, AA [auth BA], AB [auth BB], AC [auth BC], B, BA [auth CA], BB [auth CB], BC [auth CC], C, CA [auth DA], CB [auth DB], CC [auth DC], D, DA [auth EA], DB [auth EB], DC [auth EC], E, EA [auth FA], EB [auth FB], EC [auth FC], F, FA [auth GA], FB [auth GB], FC [auth GC], G, GA [auth HA], GB [auth HB], H, HA [auth IA], HB [auth IB], I, IA [auth JA], IB [auth JB], J, JA [auth KA], JB [auth KB], K, KA [auth LA], KB [auth LB], L, LA [auth MA], LB [auth MB], M, MA [auth NA], MB [auth NB], N, NA [auth OA], NB [auth OB], O, OA [auth PA], OB [auth PB], P, PA [auth QA], PB [auth QB], Q, QA [auth RA], QB [auth RB], R, RA [auth SA], RB [auth SB], S, SA [auth TA], SB [auth TB], T, TA [auth UA], TB [auth UB], U [auth V], UA [auth VA], UB [auth VB], V [auth W], VA [auth WA], VB [auth WB], W [auth X], WA [auth XA], WB [auth XB], X [auth Y], XA [auth YA], XB [auth YB], Y [auth Z], YA [auth ZA], YB [auth ZB], Z [auth AA], ZA [auth AB], ZB [auth AC]	PF04012	PspA/IM30 family (PspA_IM30)	PspA/IM30 family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, AA [auth BA], AB [auth BB], AC [auth BC], B, A, AA [auth BA], AB [auth BB], AC [auth BC], B, BA [auth CA], BB [auth CB], BC [auth CC], C, CA [auth DA], CB [auth DB], CC [auth DC], D, DA [auth EA], DB [auth EB], DC [auth EC], E, EA [auth FA], EB [auth FB], EC [auth FC], F, FA [auth GA], FB [auth GB], FC [auth GC], G, GA [auth HA], GB [auth HB], H, HA [auth IA], HB [auth IB], I, IA [auth JA], IB [auth JB], J, JA [auth KA], JB [auth KB], K, KA [auth LA], KB [auth LB], L, LA [auth MA], LB [auth MB], M, MA [auth NA], MB [auth NB], N, NA [auth OA], NB [auth OB], O, OA [auth PA], OB [auth PB], P, PA [auth QA], PB [auth QB], Q, QA [auth RA], QB [auth RB], R, RA [auth SA], RB [auth SB], S, SA [auth TA], SB [auth TB], T, TA [auth UA], TB [auth UB], U [auth V], UA [auth VA], UB [auth VB], V [auth W], VA [auth WA], VB [auth WB], W [auth X], WA [auth XA], WB [auth XB], X [auth Y], XA [auth YA], XB [auth YB], Y [auth Z], YA [auth ZA], YB [auth ZB], Z [auth AA], ZA [auth AB], ZB [auth AC]	vipp1	binding lipid binding	-	cell periphery cellular anatomical structure plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, AA [auth BA], AB [auth BB], AC [auth BC], B, A, AA [auth BA], AB [auth BB], AC [auth BC], B, BA [auth CA], BB [auth CB], BC [auth CC], C, CA [auth DA], CB [auth DB], CC [auth DC], D, DA [auth EA], DB [auth EB], DC [auth EC], E, EA [auth FA], EB [auth FB], EC [auth FC], F, FA [auth GA], FB [auth GB], FC [auth GC], G, GA [auth HA], GB [auth HB], H, HA [auth IA], HB [auth IB], I, IA [auth JA], IB [auth JB], J, JA [auth KA], JB [auth KB], K, KA [auth LA], KB [auth LB], L, LA [auth MA], LB [auth MB], M, MA [auth NA], MB [auth NB], N, NA [auth OA], NB [auth OB], O, OA [auth PA], OB [auth PB], P, PA [auth QA], PB [auth QB], Q, QA [auth RA], QB [auth RB], R, RA [auth SA], RB [auth SB], S, SA [auth TA], SB [auth TB], T, TA [auth UA], TB [auth UB], U [auth V], UA [auth VA], UB [auth VB], V [auth W], VA [auth WA], VB [auth WB], W [auth X], WA [auth XA], WB [auth XB], X [auth Y], XA [auth YA], XB [auth YB], Y [auth Z], YA [auth ZA], YB [auth ZB], Z [auth AA], ZA [auth AB], ZB [auth AC]	IPR007157	PspA/VIPP1	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.