6YNY | pdb_00006yny

Cryo-EM structure of Tetrahymena thermophila mitochondrial ATP synthase - F1Fo composite dimer model

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM
Membrane Protein Annotation: mpstruc

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
QA [auth g1]	SCOP2B Superfamily	ATP synthase gamma subunit-like	8099238	3000451	SCOP2B (2022-06-29)
KB [auth g2]	SCOP2B Superfamily	ATP synthase gamma subunit-like	8099238	3000451	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
ZB [auth H2]	SpoU_methylase	e6ynyH21	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: SpoU_methylase	ECOD (v295)
ZA [auth N1]	SpoU_methylase	e6ynyN11	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: SpoU_methylase	ECOD (v295)
YB [auth I2]	SpoU_methylase	e6ynyI21	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: SpoU_methylase	ECOD (v295)
YA [auth O1]	SpoU_methylase	e6ynyO11	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: SpoU_methylase	ECOD (v295)
XB [auth J2]	SpoU_methylase	e6ynyJ21	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: SpoU_methylase	ECOD (v295)
XA [auth P1]	SpoU_methylase	e6ynyP11	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: SpoU_methylase	ECOD (v295)
WB [auth K2]	SpoU_methylase	e6ynyK21	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: SpoU_methylase	ECOD (v295)
VB [auth L2]	SpoU_methylase	e6ynyL21	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: SpoU_methylase	ECOD (v295)
UB [auth M2]	SpoU_methylase	e6ynyM21	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: SpoU_methylase	ECOD (v295)
TB [auth N2]	SpoU_methylase	e6ynyN21	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: SpoU_methylase	ECOD (v295)
SB [auth O2]	SpoU_methylase	e6ynyO21	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: SpoU_methylase	ECOD (v295)
RB [auth P2]	SpoU_methylase	e6ynyP21	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: SpoU_methylase	ECOD (v295)
GB [auth Q1]	SpoU_methylase	e6ynyQ11	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: SpoU_methylase	ECOD (v295)
FB [auth H1]	SpoU_methylase	e6ynyH11	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: SpoU_methylase	ECOD (v295)
EB [auth I1]	SpoU_methylase	e6ynyI11	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: SpoU_methylase	ECOD (v295)
DB [auth J1]	SpoU_methylase	e6ynyJ11	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: SpoU_methylase	ECOD (v295)
CB [auth K1]	SpoU_methylase	e6ynyK11	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: SpoU_methylase	ECOD (v295)
BB [auth L1]	SpoU_methylase	e6ynyL11	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: SpoU_methylase	ECOD (v295)
AC [auth Q2]	SpoU_methylase	e6ynyQ21	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: SpoU_methylase	ECOD (v295)
AB [auth M1]	SpoU_methylase	e6ynyM11	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: SpoU_methylase	ECOD (v295)
WA [auth E1]	SpoU_methylase	e6ynyE11	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: SpoU_methylase	ECOD (v295)
UA [auth F1]	SpoU_methylase	e6ynyF11	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: SpoU_methylase	ECOD (v295)
SA [auth D1]	SpoU_methylase	e6ynyD11	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: SpoU_methylase	ECOD (v295)
QB [auth E2]	SpoU_methylase	e6ynyE21	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: SpoU_methylase	ECOD (v295)
OB [auth F2]	SpoU_methylase	e6ynyF21	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: SpoU_methylase	ECOD (v295)
MB [auth D2]	SpoU_methylase	e6ynyD21	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: SpoU_methylase	ECOD (v295)
VA [auth A1]	SpoU_methylase	e6ynyA11	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: SpoU_methylase	ECOD (v295)
TA [auth B1]	SpoU_methylase	e6ynyB11	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: SpoU_methylase	ECOD (v295)
RA [auth C1]	SpoU_methylase	e6ynyC11	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: SpoU_methylase	ECOD (v295)
PB [auth A2]	SpoU_methylase	e6ynyA21	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: SpoU_methylase	ECOD (v295)
NB [auth B2]	SpoU_methylase	e6ynyB21	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: SpoU_methylase	ECOD (v295)
LB [auth C2]	SpoU_methylase	e6ynyC21	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: SpoU_methylase	ECOD (v295)
QA [auth g1]	SpoU_methylase	e6ynyg11	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: SpoU_methylase	ECOD (v295)
KB [auth g2]	SpoU_methylase	e6ynyg21	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: SpoU_methylase	ECOD (v295)
PA [auth G1]	SpoU_methylase	e6ynyG11	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: SpoU_methylase	ECOD (v295)
JB [auth G2]	SpoU_methylase	e6ynyG21	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: SpoU_methylase	ECOD (v295)
S [auth e]	MIF	e6ynye1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
LA [auth E]	MIF	e6ynyE1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: MIF	ECOD (v295)
P [auth q]	SpoU_methylase	e6ynyq1	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: SpoU_methylase	ECOD (v295)
IA [auth Q]	SpoU_methylase	e6ynyQ1	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: SpoU_methylase	ECOD (v295)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C [auth d], V [auth D]	PF05873	ATP synthase D chain, mitochondrial (ATP5H) (Mt_ATP-synt_D)	ATP synthase D chain, mitochondrial (ATP5H)	-	Family
MB [auth D2], OB [auth F2], QB [auth E2], SA [auth D1], UA [auth F1], MB [auth D2], OB [auth F2], QB [auth E2], SA [auth D1], UA [auth F1], WA [auth E1]	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain (ATP-synt_ab)	ATP synthase alpha/beta family, nucleotide-binding domain	This entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho.	Domain
MB [auth D2], OB [auth F2], QB [auth E2], SA [auth D1], UA [auth F1], MB [auth D2], OB [auth F2], QB [auth E2], SA [auth D1], UA [auth F1], WA [auth E1]	PF22919	C-terminal domain of V and A type ATP synthase (ATP-synt_VA_C)	C-terminal domain of V and A type ATP synthase	This entry represents a small alpha helical domain found at the C-terminus of a variety of ATP synthases.	Domain
MB [auth D2], OB [auth F2], QB [auth E2], SA [auth D1], UA [auth F1], MB [auth D2], OB [auth F2], QB [auth E2], SA [auth D1], UA [auth F1], WA [auth E1]	PF02874	ATP synthase alpha/beta family, beta-barrel domain (ATP-synt_ab_N)	ATP synthase alpha/beta family, beta-barrel domain	This family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella.	Domain
LB [auth C2], NB [auth B2], PB [auth A2], RA [auth C1], TA [auth B1], LB [auth C2], NB [auth B2], PB [auth A2], RA [auth C1], TA [auth B1], VA [auth A1]	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain (ATP-synt_ab)	ATP synthase alpha/beta family, nucleotide-binding domain	This entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho.	Domain
LB [auth C2], NB [auth B2], PB [auth A2], RA [auth C1], TA [auth B1], LB [auth C2], NB [auth B2], PB [auth A2], RA [auth C1], TA [auth B1], VA [auth A1]	PF00306	ATP synthase alpha/beta chain, C terminal domain (ATP-synt_ab_C)	ATP synthase alpha/beta chain, C terminal domain		Domain
LB [auth C2], NB [auth B2], PB [auth A2], RA [auth C1], TA [auth B1], LB [auth C2], NB [auth B2], PB [auth A2], RA [auth C1], TA [auth B1], VA [auth A1]	PF02874	ATP synthase alpha/beta family, beta-barrel domain (ATP-synt_ab_N)	ATP synthase alpha/beta family, beta-barrel domain	This family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella.	Domain
JB [auth G2], PA [auth G1]	PF00231	ATP synthase (ATP-synt)	ATP synthase		Domain
JB [auth G2], PA [auth G1]	PF00213	ATP synthase delta (OSCP) subunit (OSCP)	ATP synthase delta (OSCP) subunit	-	Family
LA [auth E], S [auth e]	PF07992	Pyridine nucleotide-disulphide oxidoreductase (Pyr_redox_2)	Pyridine nucleotide-disulphide oxidoreductase	This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
BA [auth H], I [auth h]	ATPTT4	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding	-	-
AA [auth G], H [auth g]	ATPTT3	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding cation binding metal ion binding	-	-
G [auth c], Z [auth C]	subunit 8	-	-	-
F [auth k], Y [auth K]	subunit k	-	-	-
E [auth i], X [auth I]	subunit i/j	-	-	-
D [auth f], W [auth F]	subunit f	-	-	-
C [auth d], V [auth D]	subunit d	monoatomic cation transmembrane transporter activity proton transmembrane transporter activity monoatomic ion transmembrane transporter activity transporter activity transmembrane transporter activity	ribose phosphate metabolic process ATP metabolic process ATP biosynthetic process nucleotide biosynthetic process carbohydrate derivative metabolic process purine ribonucleotide biosynthetic process purine ribonucleoside triphosphate biosynthetic process proton motive force-driven ATP synthesis nucleobase-containing compound metabolic process ribonucleotide biosynthetic process purine nucleotide metabolic process ribonucleotide metabolic process purine nucleoside triphosphate biosynthetic process nucleobase-containing small molecule metabolic process purine-containing compound biosynthetic process ribose phosphate metabolic process ATP metabolic process ATP biosynthetic process nucleotide biosynthetic process carbohydrate derivative metabolic process purine ribonucleotide biosynthetic process purine ribonucleoside triphosphate biosynthetic process proton motive force-driven ATP synthesis nucleobase-containing compound metabolic process ribonucleotide biosynthetic process purine nucleotide metabolic process ribonucleotide metabolic process purine nucleoside triphosphate biosynthetic process nucleobase-containing small molecule metabolic process purine-containing compound biosynthetic process purine ribonucleoside triphosphate metabolic process small molecule metabolic process phosphorus metabolic process ribose phosphate biosynthetic process nucleoside phosphate metabolic process carbohydrate derivative biosynthetic process purine nucleoside triphosphate metabolic process nucleoside triphosphate biosynthetic process primary metabolic process nucleotide metabolic process nucleobase-containing compound biosynthetic process ribonucleoside triphosphate biosynthetic process purine-containing compound metabolic process biosynthetic process organophosphate metabolic process organophosphate biosynthetic process nucleoside phosphate biosynthetic process metabolic process cellular process nucleoside triphosphate metabolic process purine ribonucleotide metabolic process purine nucleotide biosynthetic process	membrane-bounded organelle mitochondrial membrane intracellular anatomical structure organelle inner membrane mitochondrion membrane intracellular membrane-bounded organelle mitochondrial inner membrane intracellular organelle organelle envelope cellular anatomical structure organelle mitochondrial envelope cytoplasm membrane-bounded organelle mitochondrial membrane intracellular anatomical structure organelle inner membrane mitochondrion membrane intracellular membrane-bounded organelle mitochondrial inner membrane intracellular organelle organelle envelope cellular anatomical structure organelle mitochondrial envelope cytoplasm organelle membrane respiratory chain complex protein-containing complex catalytic complex proton-transporting ATP synthase complex membrane protein complex cation channel complex transporter complex proton-transporting two-sector ATPase complex transmembrane transporter complex monoatomic ion channel complex
CC [auth e2], IB [auth e1]	subunit epsilon	-	-	-
BC [auth d2], HB [auth d1]	subunit delta	-	-	-
AB [auth M1], AC [auth Q2], BB [auth L1], CB [auth K1], DB [auth J1], AB [auth M1], AC [auth Q2], BB [auth L1], CB [auth K1], DB [auth J1], EB [auth I1], FB [auth H1], GB [auth Q1], RB [auth P2], SB [auth O2], TB [auth N2], UB [auth M2], VB [auth L2], WB [auth K2], XA [auth P1], XB [auth J2], YA [auth O1], YB [auth I2], ZA [auth N1], ZB [auth H2]	subunit c	hydrolase activity catalytic activity monoatomic cation transmembrane transporter activity proton transmembrane transporter activity monoatomic ion transmembrane transporter activity transporter activity transmembrane transporter activity binding lipid binding	-	protein-containing complex cellular anatomical structure proton-transporting two-sector ATPase complex membrane membrane protein complex proton-transporting two-sector ATPase complex, proton-transporting domain respiratory chain complex catalytic complex proton-transporting ATP synthase complex cation channel complex transporter complex transmembrane transporter complex monoatomic ion channel complex
MB [auth D2], OB [auth F2], QB [auth E2], SA [auth D1], UA [auth F1], MB [auth D2], OB [auth F2], QB [auth E2], SA [auth D1], UA [auth F1], WA [auth E1]	subunit beta	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding monoatomic cation transmembrane transporter activity proton transmembrane transporter activity monoatomic ion channel activity proton channel activity proton-transporting ATP synthase activity, rotational mechanism monoatomic cation channel activity passive transmembrane transporter activity channel activity monoatomic ion transmembrane transporter activity transporter activity transmembrane transporter activity catalytic activity ligase activity cation binding metal ion binding	ribose phosphate metabolic process aerobic respiration cellular respiration oxidative phosphorylation ATP metabolic process energy derivation by oxidation of organic compounds ATP biosynthetic process nucleotide biosynthetic process carbohydrate derivative metabolic process purine ribonucleotide biosynthetic process purine ribonucleoside triphosphate biosynthetic process proton motive force-driven ATP synthesis nucleobase-containing compound metabolic process ribonucleotide biosynthetic process purine nucleotide metabolic process ribose phosphate metabolic process aerobic respiration cellular respiration oxidative phosphorylation ATP metabolic process energy derivation by oxidation of organic compounds ATP biosynthetic process nucleotide biosynthetic process carbohydrate derivative metabolic process purine ribonucleotide biosynthetic process purine ribonucleoside triphosphate biosynthetic process proton motive force-driven ATP synthesis nucleobase-containing compound metabolic process ribonucleotide biosynthetic process purine nucleotide metabolic process ribonucleotide metabolic process purine nucleoside triphosphate biosynthetic process nucleobase-containing small molecule metabolic process purine-containing compound biosynthetic process purine ribonucleoside triphosphate metabolic process small molecule metabolic process phosphorus metabolic process ribose phosphate biosynthetic process nucleoside phosphate metabolic process carbohydrate derivative biosynthetic process purine nucleoside triphosphate metabolic process nucleoside triphosphate biosynthetic process primary metabolic process generation of precursor metabolites and energy nucleotide metabolic process nucleobase-containing compound biosynthetic process ribonucleoside triphosphate biosynthetic process purine-containing compound metabolic process biosynthetic process organophosphate metabolic process organophosphate biosynthetic process nucleoside phosphate biosynthetic process proton motive force-driven mitochondrial ATP synthesis metabolic process cellular process nucleoside triphosphate metabolic process purine ribonucleotide metabolic process purine nucleotide biosynthetic process	membrane-bounded organelle mitochondrial membrane intracellular anatomical structure organelle inner membrane mitochondrion membrane intracellular membrane-bounded organelle mitochondrial inner membrane intracellular organelle organelle envelope cellular anatomical structure organelle mitochondrial envelope cytoplasm membrane-bounded organelle mitochondrial membrane intracellular anatomical structure organelle inner membrane mitochondrion membrane intracellular membrane-bounded organelle mitochondrial inner membrane intracellular organelle organelle envelope cellular anatomical structure organelle mitochondrial envelope cytoplasm organelle membrane respiratory chain complex protein-containing complex catalytic complex proton-transporting ATP synthase complex membrane protein complex cation channel complex transporter complex proton-transporting two-sector ATPase complex transmembrane transporter complex monoatomic ion channel complex
LB [auth C2], NB [auth B2], PB [auth A2], RA [auth C1], TA [auth B1], LB [auth C2], NB [auth B2], PB [auth A2], RA [auth C1], TA [auth B1], VA [auth A1]	subunit alpha	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding ADP binding monoatomic cation transmembrane transporter activity proton transmembrane transporter activity monoatomic ion channel activity proton channel activity proton-transporting ATP synthase activity, rotational mechanism monoatomic cation channel activity passive transmembrane transporter activity channel activity monoatomic ion transmembrane transporter activity transporter activity transmembrane transporter activity catalytic activity ligase activity cation binding metal ion binding	-	respiratory chain complex protein-containing complex catalytic complex proton-transporting ATP synthase complex membrane membrane protein complex cation channel complex transporter complex cellular anatomical structure proton-transporting two-sector ATPase complex transmembrane transporter complex monoatomic ion channel complex
KB [auth g2], QA [auth g1]	subunit gamma	monoatomic cation transmembrane transporter activity proton transmembrane transporter activity monoatomic ion channel activity proton channel activity proton-transporting ATP synthase activity, rotational mechanism monoatomic cation channel activity passive transmembrane transporter activity channel activity monoatomic ion transmembrane transporter activity transporter activity transmembrane transporter activity catalytic activity ligase activity	-	respiratory chain complex protein-containing complex catalytic complex proton-transporting ATP synthase complex membrane membrane protein complex cation channel complex transporter complex cellular anatomical structure proton-transporting two-sector ATPase complex transmembrane transporter complex monoatomic ion channel complex
JB [auth G2], PA [auth G1]	Oligomycin sensitivity-conferring protein (OSCP)	monoatomic cation transmembrane transporter activity proton transmembrane transporter activity monoatomic ion channel activity proton channel activity proton-transporting ATP synthase activity, rotational mechanism monoatomic cation channel activity passive transmembrane transporter activity channel activity monoatomic ion transmembrane transporter activity transporter activity transmembrane transporter activity catalytic activity ligase activity	-	cellular anatomical structure membrane
OA [auth t]	ATPTT2	hydrolase activity, acting on ester bonds carboxylic ester hydrolase activity hydrolase activity catalytic activity	-	-
MA [auth i2], NA [auth i1]	Inhibitor of F1 (IF1)	-	-	-
B [auth b], U [auth B]	subunit b	-	-	-
LA [auth E], S [auth e]	ATPTT1	oxidoreductase activity, acting on a sulfur group of donors oxidoreductase activity sulfide:quinone oxidoreductase activity catalytic activity oxidoreductase activity, acting on a sulfur group of donors, quinone or similar compound as acceptor FAD binding flavin adenine dinucleotide binding binding nucleoside phosphate binding ion binding anion binding nucleotide binding heterocyclic compound binding small molecule binding	-	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle
KA [auth S], R [auth s]	ATPTT13	-	-	-
JA [auth R], Q [auth r]	ATPTT12	-	-	-
IA [auth Q], P [auth q]	ATPTT11	-	-	-
HA [auth P], O [auth p]	ATPTT10	-	-	-
GA [auth O], N [auth o]	ATPTT9	-	-	-
FA [auth N], M [auth n]	ATPTT8	-	-	-
EA [auth M], L [auth m]	ATPTT7	-	-	-
DA [auth L], K [auth l]	ATPTT6	-	-	-
CA [auth J], J [auth j]	ATPTT5	-	-	-
A [auth a], T [auth A]	subunit a	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C [auth d], V [auth D]	IPR036228	ATP synthase, F0 complex, subunit D superfamily, mitochondrial	Homologous Superfamily
C [auth d], V [auth D]	IPR008689	ATP synthase, F0 complex, subunit D, mitochondrial	Family
AB [auth M1], AC [auth Q2], BB [auth L1], CB [auth K1], DB [auth J1], AB [auth M1], AC [auth Q2], BB [auth L1], CB [auth K1], DB [auth J1], EB [auth I1], FB [auth H1], GB [auth Q1], RB [auth P2], SB [auth O2], TB [auth N2], UB [auth M2], VB [auth L2], WB [auth K2], XA [auth P1], XB [auth J2], YA [auth O1], YB [auth I2], ZA [auth N1], ZB [auth H2]	IPR035921	F/V-ATP synthase subunit C superfamily	Homologous Superfamily
AB [auth M1], AC [auth Q2], BB [auth L1], CB [auth K1], DB [auth J1], AB [auth M1], AC [auth Q2], BB [auth L1], CB [auth K1], DB [auth J1], EB [auth I1], FB [auth H1], GB [auth Q1], RB [auth P2], SB [auth O2], TB [auth N2], UB [auth M2], VB [auth L2], WB [auth K2], XA [auth P1], XB [auth J2], YA [auth O1], YB [auth I2], ZA [auth N1], ZB [auth H2]	IPR038662	F1F0 ATP synthase subunit C superfamily	Homologous Superfamily
AB [auth M1], AC [auth Q2], BB [auth L1], CB [auth K1], DB [auth J1], AB [auth M1], AC [auth Q2], BB [auth L1], CB [auth K1], DB [auth J1], EB [auth I1], FB [auth H1], GB [auth Q1], RB [auth P2], SB [auth O2], TB [auth N2], UB [auth M2], VB [auth L2], WB [auth K2], XA [auth P1], XB [auth J2], YA [auth O1], YB [auth I2], ZA [auth N1], ZB [auth H2]	IPR020537	ATP synthase, F0 complex, subunit C, DCCD-binding site	Binding Site
AB [auth M1], AC [auth Q2], BB [auth L1], CB [auth K1], DB [auth J1], AB [auth M1], AC [auth Q2], BB [auth L1], CB [auth K1], DB [auth J1], EB [auth I1], FB [auth H1], GB [auth Q1], RB [auth P2], SB [auth O2], TB [auth N2], UB [auth M2], VB [auth L2], WB [auth K2], XA [auth P1], XB [auth J2], YA [auth O1], YB [auth I2], ZA [auth N1], ZB [auth H2]	IPR002379	V-ATPase proteolipid subunit C-like domain	Domain
MB [auth D2], OB [auth F2], QB [auth E2], SA [auth D1], UA [auth F1], MB [auth D2], OB [auth F2], QB [auth E2], SA [auth D1], UA [auth F1], WA [auth E1]	IPR004100	ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain	Domain
MB [auth D2], OB [auth F2], QB [auth E2], SA [auth D1], UA [auth F1], MB [auth D2], OB [auth F2], QB [auth E2], SA [auth D1], UA [auth F1], WA [auth E1]	IPR024034	ATPase, F1/V1 complex, beta/alpha subunit, C-terminal	Homologous Superfamily
MB [auth D2], OB [auth F2], QB [auth E2], SA [auth D1], UA [auth F1], MB [auth D2], OB [auth F2], QB [auth E2], SA [auth D1], UA [auth F1], WA [auth E1]	IPR036121	ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily	Homologous Superfamily
MB [auth D2], OB [auth F2], QB [auth E2], SA [auth D1], UA [auth F1], MB [auth D2], OB [auth F2], QB [auth E2], SA [auth D1], UA [auth F1], WA [auth E1]	IPR020003	ATPase, alpha/beta subunit, nucleotide-binding domain, active site	Active Site
MB [auth D2], OB [auth F2], QB [auth E2], SA [auth D1], UA [auth F1], MB [auth D2], OB [auth F2], QB [auth E2], SA [auth D1], UA [auth F1], WA [auth E1]	IPR050053	ATPase alpha/beta chains	Family
MB [auth D2], OB [auth F2], QB [auth E2], SA [auth D1], UA [auth F1], MB [auth D2], OB [auth F2], QB [auth E2], SA [auth D1], UA [auth F1], WA [auth E1]	IPR000194	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	Domain
MB [auth D2], OB [auth F2], QB [auth E2], SA [auth D1], UA [auth F1], MB [auth D2], OB [auth F2], QB [auth E2], SA [auth D1], UA [auth F1], WA [auth E1]	IPR055190	ATP synthase A/B type, C-terminal domain	Domain
MB [auth D2], OB [auth F2], QB [auth E2], SA [auth D1], UA [auth F1], MB [auth D2], OB [auth F2], QB [auth E2], SA [auth D1], UA [auth F1], WA [auth E1]	IPR003593	AAA+ ATPase domain	Domain
MB [auth D2], OB [auth F2], QB [auth E2], SA [auth D1], UA [auth F1], MB [auth D2], OB [auth F2], QB [auth E2], SA [auth D1], UA [auth F1], WA [auth E1]	IPR005722	ATP synthase, F1 complex, beta subunit	Family
MB [auth D2], OB [auth F2], QB [auth E2], SA [auth D1], UA [auth F1], MB [auth D2], OB [auth F2], QB [auth E2], SA [auth D1], UA [auth F1], WA [auth E1]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
LB [auth C2], NB [auth B2], PB [auth A2], RA [auth C1], TA [auth B1], LB [auth C2], NB [auth B2], PB [auth A2], RA [auth C1], TA [auth B1], VA [auth A1]	IPR038376	ATP synthase, alpha subunit, C-terminal domain superfamily	Homologous Superfamily
LB [auth C2], NB [auth B2], PB [auth A2], RA [auth C1], TA [auth B1], LB [auth C2], NB [auth B2], PB [auth A2], RA [auth C1], TA [auth B1], VA [auth A1]	IPR004100	ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain	Domain
LB [auth C2], NB [auth B2], PB [auth A2], RA [auth C1], TA [auth B1], LB [auth C2], NB [auth B2], PB [auth A2], RA [auth C1], TA [auth B1], VA [auth A1]	IPR033732	ATP synthase, F1 complex, alpha subunit nucleotide-binding domain	Domain
LB [auth C2], NB [auth B2], PB [auth A2], RA [auth C1], TA [auth B1], LB [auth C2], NB [auth B2], PB [auth A2], RA [auth C1], TA [auth B1], VA [auth A1]	IPR036121	ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily	Homologous Superfamily
LB [auth C2], NB [auth B2], PB [auth A2], RA [auth C1], TA [auth B1], LB [auth C2], NB [auth B2], PB [auth A2], RA [auth C1], TA [auth B1], VA [auth A1]	IPR023366	ATP synthase subunit alpha, N-terminal domain-like superfamily	Homologous Superfamily
LB [auth C2], NB [auth B2], PB [auth A2], RA [auth C1], TA [auth B1], LB [auth C2], NB [auth B2], PB [auth A2], RA [auth C1], TA [auth B1], VA [auth A1]	IPR000793	ATP synthase, alpha subunit, C-terminal	Domain
LB [auth C2], NB [auth B2], PB [auth A2], RA [auth C1], TA [auth B1], LB [auth C2], NB [auth B2], PB [auth A2], RA [auth C1], TA [auth B1], VA [auth A1]	IPR020003	ATPase, alpha/beta subunit, nucleotide-binding domain, active site	Active Site
LB [auth C2], NB [auth B2], PB [auth A2], RA [auth C1], TA [auth B1], LB [auth C2], NB [auth B2], PB [auth A2], RA [auth C1], TA [auth B1], VA [auth A1]	IPR000194	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	Domain
LB [auth C2], NB [auth B2], PB [auth A2], RA [auth C1], TA [auth B1], LB [auth C2], NB [auth B2], PB [auth A2], RA [auth C1], TA [auth B1], VA [auth A1]	IPR005294	ATP synthase, F1 complex, alpha subunit	Family
LB [auth C2], NB [auth B2], PB [auth A2], RA [auth C1], TA [auth B1], LB [auth C2], NB [auth B2], PB [auth A2], RA [auth C1], TA [auth B1], VA [auth A1]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
KB [auth g2], QA [auth g1]	IPR000131	ATP synthase, F1 complex, gamma subunit	Family
KB [auth g2], QA [auth g1]	IPR035968	ATP synthase, F1 complex, gamma subunit superfamily	Homologous Superfamily
JB [auth G2], PA [auth G1]	IPR000711	ATPase, OSCP/delta subunit	Family
JB [auth G2], PA [auth G1]	IPR026015	F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily	Homologous Superfamily
OA [auth t]	IPR000073	Alpha/beta hydrolase fold-1	Domain
OA [auth t]	IPR029058	Alpha/Beta hydrolase fold	Homologous Superfamily
LA [auth E], S [auth e]	IPR015904	Sulphide quinone-reductase	Family
LA [auth E], S [auth e]	IPR023753	FAD/NAD(P)-binding domain	Domain
LA [auth E], S [auth e]	IPR036188	FAD/NAD(P)-binding domain superfamily	Homologous Superfamily
IA [auth Q], P [auth q]	IPR009081	Phosphopantetheine binding ACP domain	Domain
IA [auth Q], P [auth q]	IPR036736	ACP-like superfamily	Homologous Superfamily

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A [auth a], AA [auth G], AB [auth M1], AC [auth Q2], B [auth b] A [auth a], AA [auth G], AB [auth M1], AC [auth Q2], B [auth b], BB [auth L1], C [auth d], CB [auth K1], DB [auth J1], E [auth i], EB [auth I1], F [auth k], FB [auth H1], G [auth c], GB [auth Q1], H [auth g], JB [auth G2], KB [auth g2], LB [auth C2], MB [auth D2], NB [auth B2], OB [auth F2], PA [auth G1], PB [auth A2], QA [auth g1], QB [auth E2], RA [auth C1], RB [auth P2], SA [auth D1], SB [auth O2], T [auth A], TA [auth B1], TB [auth N2], U [auth B], UA [auth F1], UB [auth M2], V [auth D], VA [auth A1], VB [auth L2], WA [auth E1], WB [auth K2], X [auth I], XA [auth P1], XB [auth J2], Y [auth K], YA [auth O1], YB [auth I2], Z [auth C], ZA [auth N1], ZB [auth H2]	OPM	Transmembrane	Alpha-helical polytopic	Proton or Sodium translocating F-type, V-type and A-type ATPases	V-type and F-type ATPases

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A [auth a], AA [auth G], AB [auth M1], AC [auth Q2], B [auth b] A [auth a], AA [auth G], AB [auth M1], AC [auth Q2], B [auth b], BB [auth L1], C [auth d], CB [auth K1], DB [auth J1], E [auth i], EB [auth I1], F [auth k], FB [auth H1], G [auth c], GB [auth Q1], H [auth g], JB [auth G2], KB [auth g2], LB [auth C2], MB [auth D2], NB [auth B2], OB [auth F2], PA [auth G1], PB [auth A2], QA [auth g1], QB [auth E2], RA [auth C1], RB [auth P2], SA [auth D1], SB [auth O2], T [auth A], TA [auth B1], TB [auth N2], U [auth B], UA [auth F1], UB [auth M2], V [auth D], VA [auth A1], VB [auth L2], WA [auth E1], WB [auth K2], X [auth I], XA [auth P1], XB [auth J2], Y [auth K], YA [auth O1], YB [auth I2], Z [auth C], ZA [auth N1], ZB [auth H2]	mpstruc	TRANSMEMBRANE PROTEINS: ALPHA-HELICAL	F-type ATPase	F₁F_o type III ATP synthase (composite structure, dimeric)

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.