6YNY | pdb_00006yny

Cryo-EM structure of Tetrahymena thermophila mitochondrial ATP synthase - F1Fo composite dimer model

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM
Membrane Protein Annotation: mpstruc

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
QA [auth g1]	SCOP2B Superfamily	ATP synthase gamma subunit-like	8099238	3000451	SCOP2B (2022-06-29)
KB [auth g2]	SCOP2B Superfamily	ATP synthase gamma subunit-like	8099238	3000451	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
ZB [auth H2]	SpoU_methylase	e6ynyH21	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SpoU_methylase	ECOD (v295.2)
ZA [auth N1]	SpoU_methylase	e6ynyN11	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SpoU_methylase	ECOD (v295.2)
YB [auth I2]	SpoU_methylase	e6ynyI21	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SpoU_methylase	ECOD (v295.2)
YA [auth O1]	SpoU_methylase	e6ynyO11	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SpoU_methylase	ECOD (v295.2)
XB [auth J2]	SpoU_methylase	e6ynyJ21	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SpoU_methylase	ECOD (v295.2)
XA [auth P1]	SpoU_methylase	e6ynyP11	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SpoU_methylase	ECOD (v295.2)
WB [auth K2]	SpoU_methylase	e6ynyK21	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SpoU_methylase	ECOD (v295.2)
VB [auth L2]	SpoU_methylase	e6ynyL21	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SpoU_methylase	ECOD (v295.2)
UB [auth M2]	SpoU_methylase	e6ynyM21	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SpoU_methylase	ECOD (v295.2)
TB [auth N2]	SpoU_methylase	e6ynyN21	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SpoU_methylase	ECOD (v295.2)
SB [auth O2]	SpoU_methylase	e6ynyO21	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SpoU_methylase	ECOD (v295.2)
RB [auth P2]	SpoU_methylase	e6ynyP21	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SpoU_methylase	ECOD (v295.2)
GB [auth Q1]	SpoU_methylase	e6ynyQ11	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SpoU_methylase	ECOD (v295.2)
FB [auth H1]	SpoU_methylase	e6ynyH11	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SpoU_methylase	ECOD (v295.2)
EB [auth I1]	SpoU_methylase	e6ynyI11	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SpoU_methylase	ECOD (v295.2)
DB [auth J1]	SpoU_methylase	e6ynyJ11	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SpoU_methylase	ECOD (v295.2)
CB [auth K1]	SpoU_methylase	e6ynyK11	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SpoU_methylase	ECOD (v295.2)
BB [auth L1]	SpoU_methylase	e6ynyL11	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SpoU_methylase	ECOD (v295.2)
AC [auth Q2]	SpoU_methylase	e6ynyQ21	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SpoU_methylase	ECOD (v295.2)
AB [auth M1]	SpoU_methylase	e6ynyM11	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SpoU_methylase	ECOD (v295.2)
WA [auth E1]	SpoU_methylase	e6ynyE11	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SpoU_methylase	ECOD (v295.2)
UA [auth F1]	SpoU_methylase	e6ynyF11	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SpoU_methylase	ECOD (v295.2)
SA [auth D1]	SpoU_methylase	e6ynyD11	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SpoU_methylase	ECOD (v295.2)
QB [auth E2]	SpoU_methylase	e6ynyE21	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SpoU_methylase	ECOD (v295.2)
OB [auth F2]	SpoU_methylase	e6ynyF21	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SpoU_methylase	ECOD (v295.2)
MB [auth D2]	SpoU_methylase	e6ynyD21	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SpoU_methylase	ECOD (v295.2)
VA [auth A1]	SpoU_methylase	e6ynyA11	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SpoU_methylase	ECOD (v295.2)
TA [auth B1]	SpoU_methylase	e6ynyB11	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SpoU_methylase	ECOD (v295.2)
RA [auth C1]	SpoU_methylase	e6ynyC11	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SpoU_methylase	ECOD (v295.2)
PB [auth A2]	SpoU_methylase	e6ynyA21	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SpoU_methylase	ECOD (v295.2)
NB [auth B2]	SpoU_methylase	e6ynyB21	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SpoU_methylase	ECOD (v295.2)
LB [auth C2]	SpoU_methylase	e6ynyC21	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SpoU_methylase	ECOD (v295.2)
QA [auth g1]	SpoU_methylase	e6ynyg11	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SpoU_methylase	ECOD (v295.2)
KB [auth g2]	SpoU_methylase	e6ynyg21	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SpoU_methylase	ECOD (v295.2)
PA [auth G1]	SpoU_methylase	e6ynyG11	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SpoU_methylase	ECOD (v295.2)
JB [auth G2]	SpoU_methylase	e6ynyG21	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SpoU_methylase	ECOD (v295.2)
S [auth e]	MIF	e6ynye1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: MIF	ECOD (v295.2)
LA [auth E]	MIF	e6ynyE1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: MIF	ECOD (v295.2)
P [auth q]	SpoU_methylase	e6ynyq1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SpoU_methylase	ECOD (v295.2)
IA [auth Q]	SpoU_methylase	e6ynyQ1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SpoU_methylase	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C [auth d], V [auth D]	PF05873	ATP synthase D chain, mitochondrial (ATP5H) (Mt_ATP-synt_D)	ATP synthase D chain, mitochondrial (ATP5H)	-	Family
MB [auth D2], OB [auth F2], QB [auth E2], SA [auth D1], UA [auth F1], MB [auth D2], OB [auth F2], QB [auth E2], SA [auth D1], UA [auth F1], WA [auth E1]	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain (ATP-synt_ab)	ATP synthase alpha/beta family, nucleotide-binding domain	This entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho.	Domain
MB [auth D2], OB [auth F2], QB [auth E2], SA [auth D1], UA [auth F1], MB [auth D2], OB [auth F2], QB [auth E2], SA [auth D1], UA [auth F1], WA [auth E1]	PF22919	C-terminal domain of V and A type ATP synthase (ATP-synt_VA_C)	C-terminal domain of V and A type ATP synthase	This entry represents a small alpha helical domain found at the C-terminus of a variety of ATP synthases.	Domain
MB [auth D2], OB [auth F2], QB [auth E2], SA [auth D1], UA [auth F1], MB [auth D2], OB [auth F2], QB [auth E2], SA [auth D1], UA [auth F1], WA [auth E1]	PF02874	ATP synthase alpha/beta family, beta-barrel domain (ATP-synt_ab_N)	ATP synthase alpha/beta family, beta-barrel domain	This family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella.	Domain
LB [auth C2], NB [auth B2], PB [auth A2], RA [auth C1], TA [auth B1], LB [auth C2], NB [auth B2], PB [auth A2], RA [auth C1], TA [auth B1], VA [auth A1]	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain (ATP-synt_ab)	ATP synthase alpha/beta family, nucleotide-binding domain	This entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho.	Domain
LB [auth C2], NB [auth B2], PB [auth A2], RA [auth C1], TA [auth B1], LB [auth C2], NB [auth B2], PB [auth A2], RA [auth C1], TA [auth B1], VA [auth A1]	PF00306	ATP synthase alpha/beta chain, C terminal domain (ATP-synt_ab_C)	ATP synthase alpha/beta chain, C terminal domain		Domain
LB [auth C2], NB [auth B2], PB [auth A2], RA [auth C1], TA [auth B1], LB [auth C2], NB [auth B2], PB [auth A2], RA [auth C1], TA [auth B1], VA [auth A1]	PF02874	ATP synthase alpha/beta family, beta-barrel domain (ATP-synt_ab_N)	ATP synthase alpha/beta family, beta-barrel domain	This family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella.	Domain
JB [auth G2], PA [auth G1]	PF00231	ATP synthase (ATP-synt)	ATP synthase		Domain
JB [auth G2], PA [auth G1]	PF00213	ATP synthase delta (OSCP) subunit (OSCP)	ATP synthase delta (OSCP) subunit	-	Family
LA [auth E], S [auth e]	PF07992	Pyridine nucleotide-disulphide oxidoreductase (Pyr_redox_2)	Pyridine nucleotide-disulphide oxidoreductase	This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
BA [auth H], I [auth h]	ATPTT4	-	-	-
AA [auth G], H [auth g]	ATPTT3	-	-	-
G [auth c], Z [auth C]	subunit 8	-	-	-
F [auth k], Y [auth K]	subunit k	-	-	-
E [auth i], X [auth I]	subunit i/j	-	-	-
D [auth f], W [auth F]	subunit f	-	-	-
C [auth d], V [auth D]	subunit d	-	-	-
CC [auth e2], IB [auth e1]	subunit epsilon	-	-	-
BC [auth d2], HB [auth d1]	subunit delta	-	-	-
AB [auth M1], AC [auth Q2], BB [auth L1], CB [auth K1], DB [auth J1], AB [auth M1], AC [auth Q2], BB [auth L1], CB [auth K1], DB [auth J1], EB [auth I1], FB [auth H1], GB [auth Q1], RB [auth P2], SB [auth O2], TB [auth N2], UB [auth M2], VB [auth L2], WB [auth K2], XA [auth P1], XB [auth J2], YA [auth O1], YB [auth I2], ZA [auth N1], ZB [auth H2]	subunit c	monoatomic cation transmembrane transporter activity proton transmembrane transporter activity monoatomic ion transmembrane transporter activity transporter activity transmembrane transporter activity	-	protein-containing complex cellular anatomical structure proton-transporting two-sector ATPase complex membrane membrane protein complex proton-transporting two-sector ATPase complex, proton-transporting domain
MB [auth D2], OB [auth F2], QB [auth E2], SA [auth D1], UA [auth F1], MB [auth D2], OB [auth F2], QB [auth E2], SA [auth D1], UA [auth F1], WA [auth E1]	subunit beta	-	-	-
LB [auth C2], NB [auth B2], PB [auth A2], RA [auth C1], TA [auth B1], LB [auth C2], NB [auth B2], PB [auth A2], RA [auth C1], TA [auth B1], VA [auth A1]	subunit alpha	-	-	-
KB [auth g2], QA [auth g1]	subunit gamma	-	-	-
JB [auth G2], PA [auth G1]	Oligomycin sensitivity-conferring protein (OSCP)	-	-	-
OA [auth t]	ATPTT2	hydrolase activity, acting on ester bonds carboxylic ester hydrolase activity hydrolase activity catalytic activity	-	-
MA [auth i2], NA [auth i1]	Inhibitor of F1 (IF1)	-	-	-
B [auth b], U [auth B]	subunit b	-	-	-
LA [auth E], S [auth e]	ATPTT1	oxidoreductase activity, acting on a sulfur group of donors oxidoreductase activity sulfide:quinone oxidoreductase activity catalytic activity oxidoreductase activity, acting on a sulfur group of donors, quinone or similar compound as acceptor FAD binding flavin adenine dinucleotide binding binding nucleoside phosphate binding ion binding anion binding nucleotide binding heterocyclic compound binding small molecule binding	-	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle
KA [auth S], R [auth s]	ATPTT13	-	-	-
JA [auth R], Q [auth r]	ATPTT12	-	-	-
IA [auth Q], P [auth q]	ATPTT11	-	-	-
HA [auth P], O [auth p]	ATPTT10	-	-	-
GA [auth O], N [auth o]	ATPTT9	-	-	-
FA [auth N], M [auth n]	ATPTT8	-	-	-
EA [auth M], L [auth m]	ATPTT7	-	-	-
DA [auth L], K [auth l]	ATPTT6	-	-	-
CA [auth J], J [auth j]	ATPTT5	-	-	-
A [auth a], T [auth A]	subunit a	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
AB [auth M1], AC [auth Q2], BB [auth L1], CB [auth K1], DB [auth J1], AB [auth M1], AC [auth Q2], BB [auth L1], CB [auth K1], DB [auth J1], EB [auth I1], FB [auth H1], GB [auth Q1], RB [auth P2], SB [auth O2], TB [auth N2], UB [auth M2], VB [auth L2], WB [auth K2], XA [auth P1], XB [auth J2], YA [auth O1], YB [auth I2], ZA [auth N1], ZB [auth H2]	IPR035921	F/V-ATP synthase subunit C superfamily	Homologous Superfamily
AB [auth M1], AC [auth Q2], BB [auth L1], CB [auth K1], DB [auth J1], AB [auth M1], AC [auth Q2], BB [auth L1], CB [auth K1], DB [auth J1], EB [auth I1], FB [auth H1], GB [auth Q1], RB [auth P2], SB [auth O2], TB [auth N2], UB [auth M2], VB [auth L2], WB [auth K2], XA [auth P1], XB [auth J2], YA [auth O1], YB [auth I2], ZA [auth N1], ZB [auth H2]	IPR038662	F1F0 ATP synthase subunit C superfamily	Homologous Superfamily
AB [auth M1], AC [auth Q2], BB [auth L1], CB [auth K1], DB [auth J1], AB [auth M1], AC [auth Q2], BB [auth L1], CB [auth K1], DB [auth J1], EB [auth I1], FB [auth H1], GB [auth Q1], RB [auth P2], SB [auth O2], TB [auth N2], UB [auth M2], VB [auth L2], WB [auth K2], XA [auth P1], XB [auth J2], YA [auth O1], YB [auth I2], ZA [auth N1], ZB [auth H2]	IPR020537	ATP synthase, F0 complex, subunit C, DCCD-binding site	Binding Site
AB [auth M1], AC [auth Q2], BB [auth L1], CB [auth K1], DB [auth J1], AB [auth M1], AC [auth Q2], BB [auth L1], CB [auth K1], DB [auth J1], EB [auth I1], FB [auth H1], GB [auth Q1], RB [auth P2], SB [auth O2], TB [auth N2], UB [auth M2], VB [auth L2], WB [auth K2], XA [auth P1], XB [auth J2], YA [auth O1], YB [auth I2], ZA [auth N1], ZB [auth H2]	IPR002379	V-ATPase proteolipid subunit C-like domain	Domain
OA [auth t]	IPR000073	Alpha/beta hydrolase fold-1	Domain
OA [auth t]	IPR029058	Alpha/Beta hydrolase fold	Homologous Superfamily
LA [auth E], S [auth e]	IPR015904	Sulphide quinone-reductase	Family
LA [auth E], S [auth e]	IPR023753	FAD/NAD(P)-binding domain	Domain
LA [auth E], S [auth e]	IPR036188	FAD/NAD(P)-binding domain superfamily	Homologous Superfamily

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A [auth a], AA [auth G], AB [auth M1], AC [auth Q2], B [auth b] A [auth a], AA [auth G], AB [auth M1], AC [auth Q2], B [auth b], BB [auth L1], CB [auth K1], DB [auth J1], EA [auth M], EB [auth I1], FB [auth H1], G [auth c], GB [auth Q1], H [auth g], HA [auth P], L [auth m], O [auth p], RB [auth P2], SB [auth O2], T [auth A], TB [auth N2], U [auth B], UB [auth M2], VB [auth L2], WB [auth K2], XA [auth P1], XB [auth J2], YA [auth O1], YB [auth I2], Z [auth C], ZA [auth N1], ZB [auth H2]	OPM	Transmembrane	Alpha-helical polytopic	Proton or Sodium translocating F-type, V-type and A-type ATPases	V-type and F-type ATPases

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A [auth a], AA [auth G], AB [auth M1], AC [auth Q2], B [auth b] A [auth a], AA [auth G], AB [auth M1], AC [auth Q2], B [auth b], BB [auth L1], CB [auth K1], DB [auth J1], EA [auth M], EB [auth I1], FB [auth H1], G [auth c], GB [auth Q1], H [auth g], HA [auth P], L [auth m], O [auth p], RB [auth P2], SB [auth O2], T [auth A], TB [auth N2], U [auth B], UB [auth M2], VB [auth L2], WB [auth K2], XA [auth P1], XB [auth J2], YA [auth O1], YB [auth I2], Z [auth C], ZA [auth N1], ZB [auth H2]	mpstruc	TRANSMEMBRANE PROTEINS: ALPHA-HELICAL	F-type ATPase	F₁F_o type III ATP synthase (composite structure, dimeric)