6WXG
Cryo-EM reconstruction of VP5*/VP8* assembly from rhesus rotavirus particles - Reversed conformation
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
D [auth A] | PF00980 | e6wxgA1 | A: beta sandwiches | X: jelly-roll | H: Viral protein domain (From Topology) | T: Viral protein domain | F: PF00980 | ECOD (1.6) |
D [auth A] | PF00980 | e6wxgA2 | A: alpha bundles | X: A virus capsid protein alpha-helical domain (From Topology) | H: A virus capsid protein alpha-helical domain (From Topology) | T: A virus capsid protein alpha-helical domain | F: PF00980 | ECOD (1.6) |
E [auth B] | PF00980 | e6wxgB1 | A: beta sandwiches | X: jelly-roll | H: Viral protein domain (From Topology) | T: Viral protein domain | F: PF00980 | ECOD (1.6) |
E [auth B] | PF00980 | e6wxgB2 | A: alpha bundles | X: A virus capsid protein alpha-helical domain (From Topology) | H: A virus capsid protein alpha-helical domain (From Topology) | T: A virus capsid protein alpha-helical domain | F: PF00980 | ECOD (1.6) |
F [auth C] | PF00980 | e6wxgC2 | A: beta sandwiches | X: jelly-roll | H: Viral protein domain (From Topology) | T: Viral protein domain | F: PF00980 | ECOD (1.6) |
F [auth C] | PF00980 | e6wxgC1 | A: alpha bundles | X: A virus capsid protein alpha-helical domain (From Topology) | H: A virus capsid protein alpha-helical domain (From Topology) | T: A virus capsid protein alpha-helical domain | F: PF00980 | ECOD (1.6) |
G [auth D] | PF00980 | e6wxgD2 | A: beta sandwiches | X: jelly-roll | H: Viral protein domain (From Topology) | T: Viral protein domain | F: PF00980 | ECOD (1.6) |
G [auth D] | PF00980 | e6wxgD1 | A: alpha bundles | X: A virus capsid protein alpha-helical domain (From Topology) | H: A virus capsid protein alpha-helical domain (From Topology) | T: A virus capsid protein alpha-helical domain | F: PF00980 | ECOD (1.6) |
H [auth E] | PF00980 | e6wxgE2 | A: beta sandwiches | X: jelly-roll | H: Viral protein domain (From Topology) | T: Viral protein domain | F: PF00980 | ECOD (1.6) |
H [auth E] | PF00980 | e6wxgE1 | A: alpha bundles | X: A virus capsid protein alpha-helical domain (From Topology) | H: A virus capsid protein alpha-helical domain (From Topology) | T: A virus capsid protein alpha-helical domain | F: PF00980 | ECOD (1.6) |
I [auth F] | PF00980 | e6wxgF2 | A: beta sandwiches | X: jelly-roll | H: Viral protein domain (From Topology) | T: Viral protein domain | F: PF00980 | ECOD (1.6) |
I [auth F] | PF00980 | e6wxgF1 | A: alpha bundles | X: A virus capsid protein alpha-helical domain (From Topology) | H: A virus capsid protein alpha-helical domain (From Topology) | T: A virus capsid protein alpha-helical domain | F: PF00980 | ECOD (1.6) |
J [auth G] | PF00980 | e6wxgG1 | A: beta sandwiches | X: jelly-roll | H: Viral protein domain (From Topology) | T: Viral protein domain | F: PF00980 | ECOD (1.6) |
J [auth G] | PF00980 | e6wxgG2 | A: alpha bundles | X: A virus capsid protein alpha-helical domain (From Topology) | H: A virus capsid protein alpha-helical domain (From Topology) | T: A virus capsid protein alpha-helical domain | F: PF00980 | ECOD (1.6) |
K [auth H] | PF00980 | e6wxgH1 | A: beta sandwiches | X: jelly-roll | H: Viral protein domain (From Topology) | T: Viral protein domain | F: PF00980 | ECOD (1.6) |
K [auth H] | PF00980 | e6wxgH2 | A: alpha bundles | X: A virus capsid protein alpha-helical domain (From Topology) | H: A virus capsid protein alpha-helical domain (From Topology) | T: A virus capsid protein alpha-helical domain | F: PF00980 | ECOD (1.6) |
L [auth I] | PF00980 | e6wxgI2 | A: beta sandwiches | X: jelly-roll | H: Viral protein domain (From Topology) | T: Viral protein domain | F: PF00980 | ECOD (1.6) |
L [auth I] | PF00980 | e6wxgI1 | A: alpha bundles | X: A virus capsid protein alpha-helical domain (From Topology) | H: A virus capsid protein alpha-helical domain (From Topology) | T: A virus capsid protein alpha-helical domain | F: PF00980 | ECOD (1.6) |
M [auth J] | PF00980 | e6wxgJ1 | A: beta sandwiches | X: jelly-roll | H: Viral protein domain (From Topology) | T: Viral protein domain | F: PF00980 | ECOD (1.6) |
M [auth J] | PF00980 | e6wxgJ2 | A: alpha bundles | X: A virus capsid protein alpha-helical domain (From Topology) | H: A virus capsid protein alpha-helical domain (From Topology) | T: A virus capsid protein alpha-helical domain | F: PF00980 | ECOD (1.6) |
N [auth K] | PF00980 | e6wxgK1 | A: beta sandwiches | X: jelly-roll | H: Viral protein domain (From Topology) | T: Viral protein domain | F: PF00980 | ECOD (1.6) |
N [auth K] | PF00980 | e6wxgK2 | A: alpha bundles | X: A virus capsid protein alpha-helical domain (From Topology) | H: A virus capsid protein alpha-helical domain (From Topology) | T: A virus capsid protein alpha-helical domain | F: PF00980 | ECOD (1.6) |
O [auth L] | PF00980 | e6wxgL2 | A: beta sandwiches | X: jelly-roll | H: Viral protein domain (From Topology) | T: Viral protein domain | F: PF00980 | ECOD (1.6) |
O [auth L] | PF00980 | e6wxgL1 | A: alpha bundles | X: A virus capsid protein alpha-helical domain (From Topology) | H: A virus capsid protein alpha-helical domain (From Topology) | T: A virus capsid protein alpha-helical domain | F: PF00980 | ECOD (1.6) |
P [auth M] | PF00980 | e6wxgM1 | A: beta sandwiches | X: jelly-roll | H: Viral protein domain (From Topology) | T: Viral protein domain | F: PF00980 | ECOD (1.6) |
P [auth M] | PF00980 | e6wxgM2 | A: alpha bundles | X: A virus capsid protein alpha-helical domain (From Topology) | H: A virus capsid protein alpha-helical domain (From Topology) | T: A virus capsid protein alpha-helical domain | F: PF00980 | ECOD (1.6) |
Q [auth N] | PF00980 | e6wxgN1 | A: beta sandwiches | X: jelly-roll | H: Viral protein domain (From Topology) | T: Viral protein domain | F: PF00980 | ECOD (1.6) |
Q [auth N] | PF00980 | e6wxgN2 | A: alpha bundles | X: A virus capsid protein alpha-helical domain (From Topology) | H: A virus capsid protein alpha-helical domain (From Topology) | T: A virus capsid protein alpha-helical domain | F: PF00980 | ECOD (1.6) |
R [auth O] | PF00980 | e6wxgO1 | A: beta sandwiches | X: jelly-roll | H: Viral protein domain (From Topology) | T: Viral protein domain | F: PF00980 | ECOD (1.6) |
R [auth O] | PF00980 | e6wxgO2 | A: alpha bundles | X: A virus capsid protein alpha-helical domain (From Topology) | H: A virus capsid protein alpha-helical domain (From Topology) | T: A virus capsid protein alpha-helical domain | F: PF00980 | ECOD (1.6) |
S [auth P] | PF00980 | e6wxgP1 | A: beta sandwiches | X: jelly-roll | H: Viral protein domain (From Topology) | T: Viral protein domain | F: PF00980 | ECOD (1.6) |
S [auth P] | PF00980 | e6wxgP2 | A: alpha bundles | X: A virus capsid protein alpha-helical domain (From Topology) | H: A virus capsid protein alpha-helical domain (From Topology) | T: A virus capsid protein alpha-helical domain | F: PF00980 | ECOD (1.6) |
T [auth Q] | PF00980 | e6wxgQ2 | A: beta sandwiches | X: jelly-roll | H: Viral protein domain (From Topology) | T: Viral protein domain | F: PF00980 | ECOD (1.6) |
T [auth Q] | PF00980 | e6wxgQ1 | A: alpha bundles | X: A virus capsid protein alpha-helical domain (From Topology) | H: A virus capsid protein alpha-helical domain (From Topology) | T: A virus capsid protein alpha-helical domain | F: PF00980 | ECOD (1.6) |
U [auth R] | PF00980 | e6wxgR1 | A: beta sandwiches | X: jelly-roll | H: Viral protein domain (From Topology) | T: Viral protein domain | F: PF00980 | ECOD (1.6) |
U [auth R] | PF00980 | e6wxgR2 | A: alpha bundles | X: A virus capsid protein alpha-helical domain (From Topology) | H: A virus capsid protein alpha-helical domain (From Topology) | T: A virus capsid protein alpha-helical domain | F: PF00980 | ECOD (1.6) |
AA [auth f] | PF00434 | e6wxgf2 | A: beta sandwiches | X: jelly-roll | H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology) | T: Jelly-roll domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
AA [auth f] | PF00434 | e6wxgf1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology) | T: Flavodoxin-like domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
BA [auth g] | PF00434 | e6wxgg1 | A: beta sandwiches | X: jelly-roll | H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology) | T: Jelly-roll domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
BA [auth g] | PF00434 | e6wxgg2 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology) | T: Flavodoxin-like domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
CA [auth h] | PF00434 | e6wxgh2 | A: beta sandwiches | X: jelly-roll | H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology) | T: Jelly-roll domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
CA [auth h] | PF00434 | e6wxgh1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology) | T: Flavodoxin-like domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
DA [auth i] | PF00434 | e6wxgi2 | A: beta sandwiches | X: jelly-roll | H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology) | T: Jelly-roll domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
DA [auth i] | PF00434 | e6wxgi1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology) | T: Flavodoxin-like domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
EA [auth j] | PF00434 | e6wxgj1 | A: beta sandwiches | X: jelly-roll | H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology) | T: Jelly-roll domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
EA [auth j] | PF00434 | e6wxgj2 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology) | T: Flavodoxin-like domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
FA [auth k] | PF00434 | e6wxgk1 | A: beta sandwiches | X: jelly-roll | H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology) | T: Jelly-roll domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
FA [auth k] | PF00434 | e6wxgk2 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology) | T: Flavodoxin-like domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
GA [auth l] | PF00434 | e6wxgl1 | A: beta sandwiches | X: jelly-roll | H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology) | T: Jelly-roll domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
GA [auth l] | PF00434 | e6wxgl2 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology) | T: Flavodoxin-like domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
HA [auth m] | PF00434 | e6wxgm1 | A: beta sandwiches | X: jelly-roll | H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology) | T: Jelly-roll domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
HA [auth m] | PF00434 | e6wxgm2 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology) | T: Flavodoxin-like domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
IA [auth n] | PF00434 | e6wxgn1 | A: beta sandwiches | X: jelly-roll | H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology) | T: Jelly-roll domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
IA [auth n] | PF00434 | e6wxgn2 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology) | T: Flavodoxin-like domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
JA [auth o] | PF00434 | e6wxgo1 | A: beta sandwiches | X: jelly-roll | H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology) | T: Jelly-roll domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
JA [auth o] | PF00434 | e6wxgo2 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology) | T: Flavodoxin-like domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
KA [auth p] | PF00434 | e6wxgp2 | A: beta sandwiches | X: jelly-roll | H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology) | T: Jelly-roll domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
KA [auth p] | PF00434 | e6wxgp1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology) | T: Flavodoxin-like domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
LA [auth q] | PF00434 | e6wxgq2 | A: beta sandwiches | X: jelly-roll | H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology) | T: Jelly-roll domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
LA [auth q] | PF00434 | e6wxgq1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology) | T: Flavodoxin-like domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
MA [auth r] | PF00434 | e6wxgr1 | A: beta sandwiches | X: jelly-roll | H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology) | T: Jelly-roll domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
MA [auth r] | PF00434 | e6wxgr2 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology) | T: Flavodoxin-like domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
V [auth a] | PF00434 | e6wxga2 | A: beta sandwiches | X: jelly-roll | H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology) | T: Jelly-roll domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
V [auth a] | PF00434 | e6wxga1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology) | T: Flavodoxin-like domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
W [auth b] | PF00434 | e6wxgb1 | A: beta sandwiches | X: jelly-roll | H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology) | T: Jelly-roll domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
W [auth b] | PF00434 | e6wxgb2 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology) | T: Flavodoxin-like domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
X [auth c] | PF00434 | e6wxgc2 | A: beta sandwiches | X: jelly-roll | H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology) | T: Jelly-roll domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
X [auth c] | PF00434 | e6wxgc1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology) | T: Flavodoxin-like domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
Y [auth d] | PF00434 | e6wxgd1 | A: beta sandwiches | X: jelly-roll | H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology) | T: Jelly-roll domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
Y [auth d] | PF00434 | e6wxgd2 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology) | T: Flavodoxin-like domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
Z [auth e] | PF00434 | e6wxge1 | A: beta sandwiches | X: jelly-roll | H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology) | T: Jelly-roll domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
Z [auth e] | PF00434 | e6wxge2 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology) | T: Flavodoxin-like domain in outer capsid glycoprotein VP7 | F: PF00434 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth 1], B [auth 2], C [auth 3] | PF17477 | Rotavirus VP4 membrane interaction domain (Rota_VP4_MID) | Rotavirus VP4 membrane interaction domain | This entry represents the VP4 membrane interaction domain. | Domain |
A [auth 1], B [auth 2], C [auth 3] | PF17478 | Rotavirus VP4 helical domain (VP4_helical) | Rotavirus VP4 helical domain | - | Domain |
PF00980 | Rotavirus major capsid protein VP6 (Rota_Capsid_VP6) | Rotavirus major capsid protein VP6 | - | Family | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth 1], B [auth 2], C [auth 3] | IPR000416 | Haemagglutinin outer capsid protein VP4, concanavalin-like domain | Domain |
A [auth 1], B [auth 2], C [auth 3] | IPR035330 | Rotavirus VP4, membrane interaction domain | Domain |
A [auth 1], B [auth 2], C [auth 3] | IPR013320 | Concanavalin A-like lectin/glucanase domain superfamily | Homologous Superfamily |
A [auth 1], B [auth 2], C [auth 3] | IPR035329 | Rotavirus VP4 helical domain | Domain |
A [auth 1], B [auth 2], C [auth 3] | IPR042546 | Outer capsid protein VP4 | Family |
A [auth 1], B [auth 2], C [auth 3] | IPR038017 | Rotavirus VP4, membrane interaction domain superfamily | Homologous Superfamily |
IPR001385 | Rotavirus A/C, major capsid protein VP6 | Family | |
IPR008935 | Virus capsid protein, alpha-helical | Homologous Superfamily | |
IPR008980 | Viral capsid/haemagglutinin protein | Homologous Superfamily | |
IPR042207 | Glycoprotein VP7, domain 1 | Homologous Superfamily | |
IPR001963 | Glycoprotein VP7 | Family | |
IPR042210 | Glycoprotein VP7, domain 2 | Homologous Superfamily |