6W17 | pdb_00006w17

Structure of Dip1-activated Arp2/3 complex with nucleated actin filament


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
CSCOP2B SuperfamilyWD40 repeat-like 8085897 3001694 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyArp2/3 complex subunits 8085061 3000751 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyActin-like ATPases 8040509 3000092 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyActin-like ATPases 8040506 3000092 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyActin-like ATPases 8040506 3000092 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyActin-like ATPases 8040509 3000092 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyActin-like ATPases 8040506 3000092 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyActin-like ATPases 8040509 3000092 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyActin-like ATPases 8040509 3000092 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyActin-like ATPases 8040506 3000092 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
Be6w17B1 A: beta barrelsX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF:ECOD (v294.2)
Ce6w17C1 A: beta barrelsX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF:ECOD (v294.2)
De6w17D1 A: beta barrelsX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF:ECOD (v294.2)
Ee6w17E1 A: beta barrelsX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF:ECOD (v294.2)
Fe6w17F1 A: beta barrelsX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF:ECOD (v294.2)
Ge6w17G1 A: beta barrelsX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF:ECOD (v294.2)
LLdh_1_Ce6w17L1 A: beta barrelsX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ldh_1_CECOD (v294.2)
KLdh_1_Ce6w17K1 A: beta barrelsX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ldh_1_CECOD (v294.2)
JLdh_1_Ce6w17J1 A: beta barrelsX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ldh_1_CECOD (v294.2)
Ie6w17I1 A: beta barrelsX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF:ECOD (v294.2)
ALdh_1_Ce6w17A1 A: beta barrelsX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Ldh_1_CECOD (v294.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B3.90.640.10 Alpha Beta Alpha-Beta Complex Actin Chain A, domain 4CATH (utative)
A3.90.640.10 Alpha Beta Alpha-Beta Complex Actin Chain A, domain 4CATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
PF04045Arp2/3 complex, 34 kD subunit p34-Arc (P34-Arc)Arp2/3 complex, 34 kD subunit p34-Arc- Family
PF04062ARP2/3 complex ARPC3 (21 kDa) subunit (P21-Arc)ARP2/3 complex ARPC3 (21 kDa) subunit- Family
PF05856ARP2/3 complex 20 kDa subunit (ARPC4) (ARPC4)ARP2/3 complex 20 kDa subunit (ARPC4)- Family
PF00022Actin (Actin)Actin- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Actin-related protein 2
Actin-related protein 2/3 complex subunit 1
Actin-related protein 2/3 complex subunit 2
Actin-related protein 2/3 complex subunit 3
Actin-related protein 2/3 complex subunit 4
Actin-related protein 2/3 complex subunit 5
M, N, O, P, Q
Phalloidin - -
I, J, K, L
Actin, alpha skeletal muscle
Protein dip1
Actin-related protein 3

InterPro: Protein Family Classification InterPro Database Homepage

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
M, N, O, P, Q
ALO Parent Component: THR

M, N, O, P, Q
G5G Parent Component: LEU

M, N, O, P, Q
HYP Parent Component: PRO

AA0030

:  4-hydroxy-L-proline MOD:00039
I, J, K, L
HIC Parent Component: HIS

AA0030 , AA0317

:  4-hydroxy-L-proline MOD:00039 , 1'-methyl-L-histidine MOD:00322