6U5F

CryoEM Structure of Pyocin R2 - precontracted - collar


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
AA [auth 1]SCOP2B SuperfamilyT6SS-like 8101743 3000580 SCOP2B (2022-06-29)
BA [auth c]SCOP2B SuperfamilyT6SS-like 8101743 3000580 SCOP2B (2022-06-29)
C [auth M]SCOP2B SuperfamilyT6SS-like 8101743 3000580 SCOP2B (2022-06-29)
CA [auth o]SCOP2B SuperfamilyT6SS-like 8101743 3000580 SCOP2B (2022-06-29)
DA [auth 2]SCOP2B SuperfamilyT6SS-like 8101743 3000580 SCOP2B (2022-06-29)
EA [auth p]SCOP2B SuperfamilyT6SS-like 8101743 3000580 SCOP2B (2022-06-29)
FA [auth 3]SCOP2B SuperfamilyT6SS-like 8101743 3000580 SCOP2B (2022-06-29)
GA [auth q]SCOP2B SuperfamilyT6SS-like 8101743 3000580 SCOP2B (2022-06-29)
HA [auth 4]SCOP2B SuperfamilyT6SS-like 8101743 3000580 SCOP2B (2022-06-29)
I [auth N]SCOP2B SuperfamilyT6SS-like 8101743 3000580 SCOP2B (2022-06-29)
IA [auth f]SCOP2B SuperfamilyT6SS-like 8101743 3000580 SCOP2B (2022-06-29)
J [auth O]SCOP2B SuperfamilyT6SS-like 8101743 3000580 SCOP2B (2022-06-29)
JA [auth r]SCOP2B SuperfamilyT6SS-like 8101743 3000580 SCOP2B (2022-06-29)
K [auth P]SCOP2B SuperfamilyT6SS-like 8101743 3000580 SCOP2B (2022-06-29)
KA [auth 5]SCOP2B SuperfamilyT6SS-like 8101743 3000580 SCOP2B (2022-06-29)
L [auth Q]SCOP2B SuperfamilyT6SS-like 8101743 3000580 SCOP2B (2022-06-29)
M [auth R]SCOP2B SuperfamilyT6SS-like 8101743 3000580 SCOP2B (2022-06-29)
T [auth a]SCOP2B SuperfamilyT6SS-like 8101743 3000580 SCOP2B (2022-06-29)
U [auth 0]SCOP2B SuperfamilyT6SS-like 8101743 3000580 SCOP2B (2022-06-29)
V [auth e]SCOP2B SuperfamilyT6SS-like 8101743 3000580 SCOP2B (2022-06-29)
W [auth d]SCOP2 FamilyTail tube protein-like 8101742 4004578 SCOP2 (2022-06-29)
W [auth d]SCOP2 SuperfamilyT6SS-like 8101743 3000580 SCOP2 (2022-06-29)
X [auth m]SCOP2B SuperfamilyT6SS-like 8101743 3000580 SCOP2B (2022-06-29)
Y [auth b]SCOP2B SuperfamilyT6SS-like 8101743 3000580 SCOP2B (2022-06-29)
Z [auth n]SCOP2B SuperfamilyT6SS-like 8101743 3000580 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AB [auth l]Phage_sheath_1Ce6u5fl2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
AB [auth l]Phage_sheath_1e6u5fl1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
B [auth G]Phage_sheath_1Ce6u5fG1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
B [auth G]Phage_sheath_1e6u5fG2 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
BB [auth x]Phage_sheath_1Ce6u5fx2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
BB [auth x]Phage_sheath_1e6u5fx1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
D [auth H]Phage_sheath_1Ce6u5fH2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
D [auth H]Phage_sheath_1e6u5fH1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
E [auth I]Phage_sheath_1Ce6u5fI2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
E [auth I]Phage_sheath_1e6u5fI1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
F [auth J]Phage_sheath_1Ce6u5fJ2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
F [auth J]Phage_sheath_1e6u5fJ1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
G [auth K]Phage_sheath_1Ce6u5fK2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
G [auth K]Phage_sheath_1e6u5fK1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
H [auth L]Phage_sheath_1Ce6u5fL1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
H [auth L]Phage_sheath_1e6u5fL2 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
LA [auth g]Phage_sheath_1Ce6u5fg2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
LA [auth g]Phage_sheath_1e6u5fg1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
MA [auth s]Phage_sheath_1Ce6u5fs1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
MA [auth s]Phage_sheath_1e6u5fs2 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
NA [auth T]Phage_sheath_1Ce6u5fT1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
NA [auth T]Phage_sheath_1e6u5fT2 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
OA [auth h]Phage_sheath_1Ce6u5fh2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
OA [auth h]Phage_sheath_1e6u5fh1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
PA [auth t]Phage_sheath_1Ce6u5ft1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
PA [auth t]Phage_sheath_1e6u5ft2 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
QA [auth U]Phage_sheath_1Ce6u5fU2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
QA [auth U]Phage_sheath_1e6u5fU1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
RA [auth i]Phage_sheath_1Ce6u5fi2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
RA [auth i]Phage_sheath_1e6u5fi1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
SPhage_sheath_1Ce6u5fS2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
SPhage_sheath_1e6u5fS1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
SA [auth u]Phage_sheath_1Ce6u5fu1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
SA [auth u]Phage_sheath_1e6u5fu2 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
TA [auth V]Phage_sheath_1Ce6u5fV2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
TA [auth V]Phage_sheath_1e6u5fV1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
UA [auth j]Phage_sheath_1Ce6u5fj1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
UA [auth j]Phage_sheath_1e6u5fj2 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
VA [auth v]Phage_sheath_1Ce6u5fv2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
VA [auth v]Phage_sheath_1e6u5fv1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
WA [auth W]Phage_sheath_1Ce6u5fW2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
WA [auth W]Phage_sheath_1e6u5fW1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
XA [auth k]Phage_sheath_1Ce6u5fk1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
XA [auth k]Phage_sheath_1e6u5fk2 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
YA [auth w]Phage_sheath_1Ce6u5fw1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
YA [auth w]Phage_sheath_1e6u5fw2 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
ZA [auth X]Phage_sheath_1Ce6u5fX1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
ZA [auth X]Phage_sheath_1e6u5fX2 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
AA [auth 1]Phage_tubee6u5f11 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: Phage_tubeECOD (1.6)
BA [auth c]Phage_tubee6u5fc1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: Phage_tubeECOD (1.6)
C [auth M]Phage_tubee6u5fM1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: Phage_tubeECOD (1.6)
CA [auth o]Phage_tubee6u5fo1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: Phage_tubeECOD (1.6)
DA [auth 2]Phage_tubee6u5f21 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: Phage_tubeECOD (1.6)
EA [auth p]Phage_tubee6u5fp1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: Phage_tubeECOD (1.6)
FA [auth 3]Phage_tubee6u5f31 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: Phage_tubeECOD (1.6)
GA [auth q]Phage_tubee6u5fq1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: Phage_tubeECOD (1.6)
HA [auth 4]Phage_tubee6u5f41 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: Phage_tubeECOD (1.6)
I [auth N]Phage_tubee6u5fN1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: Phage_tubeECOD (1.6)
IA [auth f]Phage_tubee6u5ff1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: Phage_tubeECOD (1.6)
J [auth O]Phage_tubee6u5fO1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: Phage_tubeECOD (1.6)
JA [auth r]Phage_tubee6u5fr1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: Phage_tubeECOD (1.6)
K [auth P]Phage_tubee6u5fP1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: Phage_tubeECOD (1.6)
KA [auth 5]Phage_tubee6u5f51 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: Phage_tubeECOD (1.6)
L [auth Q]Phage_tubee6u5fQ1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: Phage_tubeECOD (1.6)
M [auth R]Phage_tubee6u5fR1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: Phage_tubeECOD (1.6)
T [auth a]Phage_tubee6u5fa1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: Phage_tubeECOD (1.6)
U [auth 0]Phage_tubee6u5f01 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: Phage_tubeECOD (1.6)
V [auth e]Phage_tubee6u5fe1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: Phage_tubeECOD (1.6)
W [auth d]Phage_tubee6u5fd1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: Phage_tubeECOD (1.6)
X [auth m]Phage_tubee6u5fm1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: Phage_tubeECOD (1.6)
Y [auth b]Phage_tubee6u5fb1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: Phage_tubeECOD (1.6)
Z [auth n]Phage_tubee6u5fn1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: Phage_tubeECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF04985Phage tail tube protein FII (Phage_tube)Phage tail tube protein FII- Family
PF17482Phage tail sheath C-terminal domain (Phage_sheath_1C)Phage tail sheath C-terminal domainThis entry represents the C-terminal domain in a variety of phage tail sheath proteins [4].Domain
PF22671Tail sheath protein Gp18 domain III N-terminal region (Gp18_domIII_N)Tail sheath protein Gp18 domain III N-terminal regionThis entry represents the N-terminal segment of domain III from the phage tail sheath protein Gp18 y similar sequences [1-5]. Domain III is completed by Pfam:PF04984 with an overall structure consisting of a beta-sheet with five parallel and one anti ...This entry represents the N-terminal segment of domain III from the phage tail sheath protein Gp18 y similar sequences [1-5]. Domain III is completed by Pfam:PF04984 with an overall structure consisting of a beta-sheet with five parallel and one anti-parallel beta-strands plus six alpha-helices, which surround the beta-sheet.
Domain
PF04984Phage tail sheath protein subtilisin-like domain (Phage_sheath_1)Phage tail sheath protein subtilisin-like domainThis entry represents the second domain in a variety of phage tail sheath proteins. According to ECOD this domain has a subtilisin-like structure.Domain
PF04985Phage tail tube protein FII (Phage_tube)Phage tail tube protein FII- Family

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR020287Tail sheath protein, C-terminal domainDomain
IPR035089Tail sheath protein, subtilisin-like domainDomain
IPR052042Bacteriophage Tail Sheath Structural ProteinFamily
IPR006498Tail tube proteinFamily
IPR052042Bacteriophage Tail Sheath Structural ProteinFamily