6SGB

mt-SSU assemblosome of Trypanosoma brucei


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
XA [auth Fc]SCOP2 FamilyAcyl-carrier protein (ACP) 8095574 4000857 SCOP2 (2022-06-29)
XA [auth Fc]SCOP2 SuperfamilyACP-like 8095575 3001805 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
B [auth CF]Ribosomal_S6_1e6sgbCF1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S6 (From Topology)T: Ribosomal protein S6F: Ribosomal_S6_1ECOD (1.6)
FA [auth FC]PseudoU_synth_1e6sgbFC1 A: a+b two layersX: Alpha-beta plaitsH: Pseudouridine synthase (From Topology)T: Pseudouridine synthaseF: PseudoU_synth_1ECOD (1.6)
IA [auth FM]NAD_binding_11e6sgbFM1 A: alpha arraysX: 6-phosphogluconate dehydrogenase C-terminal domain-like (From Topology)H: 6-phosphogluconate dehydrogenase C-terminal domain-like (From Topology)T: 6-phosphogluconate dehydrogenase C-terminal domain-likeF: NAD_binding_11ECOD (1.6)
IA [auth FM]NAD_binding_2e6sgbFM2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: NAD_binding_2ECOD (1.6)
JA [auth FN]NAD_binding_11e6sgbFN1 A: alpha arraysX: 6-phosphogluconate dehydrogenase C-terminal domain-like (From Topology)H: 6-phosphogluconate dehydrogenase C-terminal domain-like (From Topology)T: 6-phosphogluconate dehydrogenase C-terminal domain-likeF: NAD_binding_11ECOD (1.6)
JA [auth FN]NAD_binding_2e6sgbFN2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: NAD_binding_2ECOD (1.6)
LA [auth FP]ADP_ribosyl_GHe6sgbFP1 A: alpha bundlesX: ADP-ribosylglycohydrolase (From Topology)H: ADP-ribosylglycohydrolase (From Topology)T: ADP-ribosylglycohydrolaseF: ADP_ribosyl_GHECOD (1.6)
XA [auth Fc]PP-bindinge6sgbFc1 A: alpha bundlesX: ACP-likeH: Acyl-carrier protein (ACP) (From Topology)T: Acyl-carrier protein (ACP)F: PP-bindingECOD (1.6)
GC [auth DJ]UNK_F_TYPEe6sgbDJ1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: UNK_F_TYPEECOD (1.6)
UC [auth FK]MAM33e6sgbFK1 A: a+b two layersX: Acidic mitochondrial matrix protein p32-likeH: Acidic mitochondrial matrix protein p32 (From Topology)T: Acidic mitochondrial matrix protein p32F: MAM33ECOD (1.6)
WC [auth FV]MAM33e6sgbFV1 A: a+b two layersX: Acidic mitochondrial matrix protein p32-likeH: Acidic mitochondrial matrix protein p32 (From Topology)T: Acidic mitochondrial matrix protein p32F: MAM33ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
Z [auth F6]PF14687Domain of unknown function (DUF4460) (DUF4460)Domain of unknown function (DUF4460)- Family
EA [auth FB],
FA [auth FC]
PF00550Phosphopantetheine attachment site (PP-binding)Phosphopantetheine attachment siteA 4'-phosphopantetheine prosthetic group is attached through a serine. This prosthetic group acts as a a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups. This domain forms a four helix bundle. This family includes memb ...A 4'-phosphopantetheine prosthetic group is attached through a serine. This prosthetic group acts as a a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups. This domain forms a four helix bundle. This family includes members not included in Prosite. The inclusion of these members is supported by sequence analysis and functional evidence. The related domain of Swiss:P19828 has the attachment serine replaced by an alanine.
Domain
MA [auth FQ],
NA [auth FR],
OA [auth FS],
PA [auth FT],
QA [auth FU]
PF02214BTB/POZ domain (BTB_2)BTB/POZ domainIn voltage-gated K+ channels this domain is responsible for subfamily-specific assembly of alpha-subunits into functional tetrameric channels [1]. In KCTD1 (Swiss:Q719H9) this domain functions as a transcriptional repressor [2]. It also mediates homo ...In voltage-gated K+ channels this domain is responsible for subfamily-specific assembly of alpha-subunits into functional tetrameric channels [1]. In KCTD1 (Swiss:Q719H9) this domain functions as a transcriptional repressor [2]. It also mediates homomultimerisation of KCTD1 and interaction of KCTD1 with the transcription factor AP-2-alpha [2-3].
Domain
RA [auth FW]PF01451Low molecular weight phosphotyrosine protein phosphatase (LMWPc)Low molecular weight phosphotyrosine protein phosphatase- Domain
SA [auth FX]PF13812Pentatricopeptide repeat domain (PPR_3)Pentatricopeptide repeat domain- Repeat
TB [auth CI]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
IC [auth DT]PF00581Rhodanese-like domain (Rhodanese)Rhodanese-like domainRhodanese has an internal duplication. This Pfam represents a single copy of this duplicated domain. The domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases.Domain
NC [auth F1]PF09243Mitochondrial small ribosomal subunit Rsm22 (Rsm22)Mitochondrial small ribosomal subunit Rsm22- Family
PC [auth FD]PF14311Probable Zinc-ribbon domain (DUF4379)Probable Zinc-ribbon domain- Family
QC [auth FF]PF01795MraW methylase family (Methyltransf_5)MraW methylase family- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth CE]uS5m---
J [auth Cb]mS23---
GD [auth Ui]UNK-i---
HD [auth Uj]UNK-j---
JD [auth Ul]UNK-l---
LD [auth Ux]UNK-x---
K [auth Cd]mS26- -
L [auth Cj]mS34- -
M [auth Cn]mS38- -
N [auth Cp]mS41- -
O [auth DD]mS51 (KRIPP1)---
P [auth DI]mS56---
Q [auth DL]mS59---
R [auth DO]mS62 (KRIPP14)-
S [auth DP]mS63 (KRIPP16)---
B [auth CF]bS6m- -
T [auth DR]mS65---
U [auth DU]mS68---
V [auth DZ]mS73- -
W [auth F2]mt-SAF2 (KRIPP2)---
X [auth F3]mt-SAF3- - -
Y [auth F5]mt-SAF5---
Z [auth F6]mt-SAF6- -
AA [auth F7]mt-SAF7 (KRIPP10) -
BA [auth F8]mt-SAF8---
CA [auth F9]mt-SAF9---
C [auth CH]uS8m---
DA [auth FA]mt-SAF10- -
EA [auth FB],
FA [auth FC]
mt-SAF11---
GA [auth FE]mt-SAF13---
HA [auth FJ]mt-SAF18---
IA [auth FM],
JA [auth FN]
mt-SAF21---
KA [auth FO]mt-SAF22 (KRIPP17)- -
LA [auth FP]mt-SAF23---
MA [auth FQ],
NA [auth FR],
OA [auth FS],
PA [auth FT],
QA [auth FU]
mt-SAF24
RA [auth FW]mt-SAF26-
SA [auth FX]mt-SAF27 (KRIPP11)- -
D [auth CK]uS11m
TA [auth FY]mt-SAF28---
UA [auth FZ]mt-SAF29---
VA [auth Fa]mt-SAF30- - -
WA [auth Fb]mt-SAF31- -
XA [auth Fc]mt-SAF32
YA [auth Fd]mt-SAF33- -
ZA [auth UA]UNK-A---
AB [auth UB],
ID [auth Uk]
UNK-B, UNK-k---
BB [auth UC]UNK-C---
CB [auth UD],
DD [auth Uf],
LB [auth UM],
PB [auth UQ]
UNK-D, UNK-M, UNK-Q, UNK-f---
E [auth CO]uS15m- -
DB [auth UE],
OB [auth UP]
UNK-E, UNK-P---
EB [auth UF],
KD [auth Um]
UNK-F, UNK-m---
FB [auth UG]UNK-G---
GB [auth UH]UNK-H---
HB [auth UI],
MB [auth UN]
UNK-I, UNK-N---
IB [auth UJ]UNK-J---
JB [auth UK]UNK-K---
KB [auth UL]UNK-L---
NB [auth UO]UNK-O---
QB [auth UY]UNK-Y---
F [auth CP]bS16m- -
RB [auth CA]9S rRNA---
SB [auth CC]mS3m---
TB [auth CI]uS9m
UB [auth CJ]uS10m---
VB [auth CN]uS14m- -
WB [auth CS]uS19m---
XB [auth Cg]mS29 -
YB [auth Ci]mS33- -
ZB [auth Ck]mS35
AC [auth DB]mS49---
G [auth CQ]uS17m---
BC [auth DC]mS50---
CC [auth DE]mS52
DC [auth DF]mS53---
EC [auth DG]mS54---
FC [auth DH]mS55 (KRIPP8)---
GC [auth DJ]mS57- -
HC [auth DK]mS58---
IC [auth DT]mS67 -
JC [auth DV]mS69- -
KC [auth DW]mS70---
H [auth CR]bS18m---
LC [auth DX]mS71- - -
MC [auth DY]mS72- -
NC [auth F1]mt-SAF1 (RSM22)
OC [auth F4]mt-SAF4---
PC [auth FD]mt-SAF12 (KRIPP18)- -
QC [auth FF]mt-SAF14 -
RC [auth FG]mt-SAF15---
SC [auth FH]mt-SAF16---
TC [auth FI]mt-SAF17---
UC [auth FK]mt-SAF19- -
I [auth Ca]mS22- -
VC [auth FL]mt-SAF20---
WC [auth FV]mt-SAF25- -
XC [auth Fe]mt-SAF34- -
YC [auth Ua]UNK-a---
ZC [auth Ub]UNK-b---
AD [auth Uc]UNK-c---
BD [auth Ud]UNK-d---
CD [auth Ue]UNK-e---
ED [auth Ug]UNK-g---
FD [auth Uh]UNK-h---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
N [auth Cp]IPR039603Small ribosomal subunit protein mS41Family
N [auth Cp]IPR019083IGR domainDomain
B [auth CF]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
Z [auth F6]IPR028031Domain of unknown function DUF4460Domain
Z [auth F6]IPR027986T-cell activation inhibitor, mitochondrialFamily
AA [auth F7]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
AA [auth F7]IPR002885Pentatricopeptide repeatRepeat
KA [auth FO]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
MA [auth FQ],
NA [auth FR],
OA [auth FS],
PA [auth FT],
QA [auth FU]
IPR003131Potassium channel tetramerisation-type BTB domainDomain
MA [auth FQ],
NA [auth FR],
OA [auth FS],
PA [auth FT],
QA [auth FU]
IPR011333SKP1/BTB/POZ domain superfamilyHomologous Superfamily
RA [auth FW]IPR036196Phosphotyrosine protein phosphatase I superfamilyHomologous Superfamily
RA [auth FW]IPR023485Phosphotyrosine protein phosphatase IDomain
SA [auth FX]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
SA [auth FX]IPR002885Pentatricopeptide repeatRepeat
D [auth CK]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
VA [auth Fa]IPR036249Thioredoxin-like superfamilyHomologous Superfamily
XA [auth Fc]IPR006162Phosphopantetheine attachment sitePTM
XA [auth Fc]IPR009081Phosphopantetheine binding ACP domainDomain
XA [auth Fc]IPR036736ACP-like superfamilyHomologous Superfamily
XA [auth Fc]IPR003231Acyl carrier proteinFamily
YA [auth Fd]IPR025487Probable Zinc-ribbon domainDomain
E [auth CO]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
TB [auth CI]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
TB [auth CI]IPR000754Small ribosomal subunit protein uS9Family
TB [auth CI]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
XB [auth Cg]IPR019368Small ribosomal subunit protein mS29Family
IC [auth DT]IPR001763Rhodanese-like domainDomain
IC [auth DT]IPR036873Rhodanese-like domain superfamilyHomologous Superfamily
NC [auth F1]IPR015324Ribosomal protein Rsm22-likeFamily
NC [auth F1]IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
NC [auth F1]IPR052571Mitochondrial RNA MethyltransferaseFamily
QC [auth FF]IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
QC [auth FF]IPR002903Ribosomal RNA small subunit methyltransferase HFamily
QC [auth FF]IPR023397S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamilyHomologous Superfamily
UC [auth FK]IPR036561Mitochondrial glycoprotein superfamilyHomologous Superfamily
UC [auth FK]IPR003428Mitochondrial glycoproteinFamily
WC [auth FV]IPR036561Mitochondrial glycoprotein superfamilyHomologous Superfamily
WC [auth FV]IPR003428Mitochondrial glycoproteinFamily