6S85
Cutting state of the E. coli Mre11-Rad50 (SbcCD) head complex bound to ADP and dsDNA.
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth C] | SMC_N_1 | e6s85C1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: SMC_N_1 | ECOD (1.6) |
C [auth A] | UNK_F_TYPE | e6s85A1 | A: alpha bundles | X: Rad50-binding domain of Mre11 (From Topology) | H: Rad50-binding domain of Mre11 (From Topology) | T: Rad50-binding domain of Mre11 | F: UNK_F_TYPE | ECOD (1.6) |
C [auth A] | Metallophos_2_1 | e6s85A3 | A: a+b four layers | X: Carbon-nitrogen hydrolase-like | H: Metallo-dependent phosphatases (From Topology) | T: Metallo-dependent phosphatases | F: Metallophos_2_1 | ECOD (1.6) |
C [auth A] | SbcD_C | e6s85A2 | A: a+b four layers | X: Mre11 nuclease C-terminal domain (From Topology) | H: Mre11 nuclease C-terminal domain (From Topology) | T: Mre11 nuclease C-terminal domain | F: SbcD_C | ECOD (1.6) |
D [auth B] | UNK_F_TYPE | e6s85B1 | A: alpha bundles | X: Rad50-binding domain of Mre11 (From Topology) | H: Rad50-binding domain of Mre11 (From Topology) | T: Rad50-binding domain of Mre11 | F: UNK_F_TYPE | ECOD (1.6) |
D [auth B] | Metallophos_2_1 | e6s85B3 | A: a+b four layers | X: Carbon-nitrogen hydrolase-like | H: Metallo-dependent phosphatases (From Topology) | T: Metallo-dependent phosphatases | F: Metallophos_2_1 | ECOD (1.6) |
D [auth B] | SbcD_C | e6s85B2 | A: a+b four layers | X: Mre11 nuclease C-terminal domain (From Topology) | H: Mre11 nuclease C-terminal domain (From Topology) | T: Mre11 nuclease C-terminal domain | F: SbcD_C | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth C], B [auth D] | PF13558 | SbcC/RAD50-like, Walker B motif (SbcC_Walker_B) | SbcC/RAD50-like, Walker B motif | This entry represents the Walker B domain of RAD50 from eukaryotes and the prokaryotic homologue SbcCD complex subunit C. RAD50-ATPase forms a complex with Mre11-nuclease that detects and processes diverse and obstructed DNA ends. This domain is sepa ... | Domain |
A [auth C], B [auth D] | PF13476 | AAA domain (AAA_23) | AAA domain | - | Domain |
C [auth A], D [auth B] | PF00149 | Calcineurin-like phosphoesterase (Metallophos) | Calcineurin-like phosphoesterase | This family includes a diverse range of phosphoesterases [1], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases as well as nucleases such as bacterial SbcD Swiss:P13457 or ... | Domain |
C [auth A], D [auth B] | PF12320 | Type 5 capsule protein repressor C-terminal domain (SbcD_C) | Type 5 capsule protein repressor C-terminal domain | This domain is found in bacteria and archaea. This domain is about 90 amino acids in length. This domain is found associated with Pfam:PF00149. SbcD works in complex with SbdC (SbcDC) which is a transcription regulator. It down-regulates transcriptio ... | Domain |