6RLO
Crystal structure of AT1412dm Fab fragment in complex with CD9 large extracellular loop
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF07654 | e6rloA2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
A | PF07686 | e6rloA1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
D [auth C] | PF07654 | e6rloC1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
D [auth C] | PF07686 | e6rloC2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
G [auth E] | PF07654 | e6rloE2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
G [auth E] | PF07686 | e6rloE1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
J [auth G] | PF07654 | e6rloG1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
J [auth G] | PF07686 | e6rloG2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
B | PF07654 | e6rloB2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
B | PF07686 | e6rloB1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
E [auth D] | PF07654 | e6rloD1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
E [auth D] | PF07686 | e6rloD2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
H [auth F] | PF07654 | e6rloF1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
H [auth F] | PF07686 | e6rloF2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
K [auth H] | PF07654 | e6rloH1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
K [auth H] | PF07686 | e6rloH2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
C [auth I] | F_UNCLASSIFIED | e6rloI1 | A: few secondary structure elements | X: Tetraspanin extracellular domain (From Topology) | H: Tetraspanin extracellular domain (From Topology) | T: Tetraspanin extracellular domain | F: F_UNCLASSIFIED | ECOD (1.6) |
F [auth J] | F_UNCLASSIFIED | e6rloJ1 | A: few secondary structure elements | X: Tetraspanin extracellular domain (From Topology) | H: Tetraspanin extracellular domain (From Topology) | T: Tetraspanin extracellular domain | F: F_UNCLASSIFIED | ECOD (1.6) |
I [auth K] | F_UNCLASSIFIED | e6rloK1 | A: few secondary structure elements | X: Tetraspanin extracellular domain (From Topology) | H: Tetraspanin extracellular domain (From Topology) | T: Tetraspanin extracellular domain | F: F_UNCLASSIFIED | ECOD (1.6) |
L | F_UNCLASSIFIED | e6rloL1 | A: few secondary structure elements | X: Tetraspanin extracellular domain (From Topology) | H: Tetraspanin extracellular domain (From Topology) | T: Tetraspanin extracellular domain | F: F_UNCLASSIFIED | ECOD (1.6) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
A, D [auth C], G [auth E], J [auth G] | Heavy Chain | IGHV3 | - | cd9 antigen | SAbDab (2024-07-05) |
B, E [auth D], H [auth F], K [auth H] | Light Chain | IGKV4 | Kappa | cd9 antigen | SAbDab (2024-07-05) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
C [auth I], F [auth J], I [auth K], L | PF00335 | Tetraspanin family (Tetraspanin) | Tetraspanin family | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
C [auth I], F [auth J], I [auth K], L | IPR042055 | CD9, extracellular domain | Domain |
C [auth I], F [auth J], I [auth K], L | IPR008952 | Tetraspanin, EC2 domain superfamily | Homologous Superfamily |
C [auth I], F [auth J], I [auth K], L | IPR000301 | Tetraspanin, animals | Family |
C [auth I], F [auth J], I [auth K], L | IPR018503 | Tetraspanin, conserved site | Conserved Site |
C [auth I], F [auth J], I [auth K], L | IPR018499 | Tetraspanin/Peripherin | Family |