6OGX
Ternary complex of OX40R (TNFRSF4) bound to Fab1 and Fab2
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- IMGT Antibody Annotation
- SAbDab Antibody Annotation
- Thera-SAbDab Antibody Annotation
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Pharos: Disease Associations
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C [auth G] | SCOP2B Superfamily | TNF receptor-like | 8042266 | 3000971 | SCOP2B (2022-06-29) |
C [auth G] | SCOP2B Superfamily | TNF receptor-like | 8042268 | 3000971 | SCOP2B (2022-06-29) |
C [auth G] | SCOP2B Superfamily | TNF receptor-like | 8042265 | 3000971 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth C] | V-set_8 | e6ogxC1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
A [auth C] | C1-set_1 | e6ogxC2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_1 | ECOD (1.6) |
B [auth D] | C1-set_4 | e6ogxD2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_4 | ECOD (1.6) |
B [auth D] | V-set | e6ogxD1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
C [auth G] | TNFR_c6_1 | e6ogxG3 | A: few secondary structure elements | X: EGF-like | H: EGF-related | T: TNF receptor-like | F: TNFR_c6_1 | ECOD (1.6) |
C [auth G] | TNFR_c6 | e6ogxG2 | A: few secondary structure elements | X: EGF-like | H: EGF-related | T: TNF receptor-like | F: TNFR_c6 | ECOD (1.6) |
C [auth G] | UNK_F_TYPE | e6ogxG1 | A: few secondary structure elements | X: EGF-like | H: EGF-related | T: TNF receptor-like | F: UNK_F_TYPE | ECOD (1.6) |
D [auth H] | V-set_8 | e6ogxH2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
D [auth H] | C1-set_1 | e6ogxH1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_1 | ECOD (1.6) |
E [auth L] | C1-set_4 | e6ogxL2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_4 | ECOD (1.6) |
E [auth L] | V-set | e6ogxL1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth C] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (utative) |
B [auth D] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (utative) |
C [auth G] | 2.10.50.10 | Mainly Beta | Ribbon | Tumor Necrosis Factor Receptor, subunit A | domain 2 | CATH (utative) |
D [auth H] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (utative) |
E [auth L] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (utative) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
A [auth C] | Antibody Fab Fragment 2 | VH-CH1 | Homo sapiens (human) | IGHV1-46*01, IGHV1-46*03, IGHJ6*01, IGHG1*01, IGHG1*02, IGHG1*04, IGHG1*05, IGHG1*12, IGHG1*14, IGHG1*13, IGHG1*09, IGHG1*10, IGHG1*07, IGHG1*11 | V-DOMAIN VH, C-DOMAIN CH1 | IG | FAB-GAMMA-1_KAPPA | IMGT (202436-0) |
B [auth D] | Antibody Fab Fragment 2 | L-KAPPA | Homo sapiens (human) | IGKV1-39*01, IGKV1D-39*01, IGKJ1*01, IGKC*01 | V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA | IG | FAB-GAMMA-1_KAPPA | IMGT (202436-0) |
C [auth G] | Tumor necrosis factor receptor superfamily member 4 | 4TNFR-CYS | Homo sapiens (human) | TNFRSF4*01 | M-LIKE-DOMAIN TNFR-CYS | RPI | 4TNFR-CYS | IMGT (202436-0) |
D [auth H] | Antibody Fab Fragment 1 | VH-CH1 | Homo sapiens (human) | IGHV1-3*01, IGHV1-46*01, IGHV1-46*03, IGHJ4*01, IGHJ4*02, IGHJ4*03, IGHG1*01, IGHG1*02, IGHG1*04, IGHG1*05, IGHG1*12, IGHG1*14, IGHG1*13, IGHG1*09, IGHG1*10, IGHG1*07, IGHG1*11 | V-DOMAIN VH, C-DOMAIN CH1 | IG | FAB-GAMMA-1_KAPPA | IMGT (202436-0) |
E [auth L] | Antibody Fab Fragment 1 | L-KAPPA | Homo sapiens (human) | IGKV1-33*01, IGKV1D-33*01, IGKV1-39*01, IGKV1D-39*01, IGKJ1*01, IGKJ2*01, IGKC*01 | V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA | IG | FAB-GAMMA-1_KAPPA | IMGT (202436-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
A [auth C] | Heavy Chain | IGHV1 | - | tumor necrosis factor receptor superfamily member 4 | SAbDab (2024-09-13) |
B [auth D] | Light Chain | IGKV1 | Kappa | tumor necrosis factor receptor superfamily member 4 | SAbDab (2024-09-13) |
D [auth H] | Heavy Chain | IGHV1 | - | tumor necrosis factor receptor superfamily member 4 | SAbDab (2024-09-13) |
E [auth L] | Light Chain | IGKV1 | Kappa | tumor necrosis factor receptor superfamily member 4 | SAbDab (2024-09-13) |
Thera-SAbDab Antibody Annotation Thera-SAbDab Database Homepage
Chain | Name | Target | Provenance Source |
---|---|---|---|
A [auth C] | Vonlerolizumab | TNFRSF4/CD134/OX40 | Therapeutic SAbDab (2024-09-13) |
B [auth D] | Vonlerolizumab | TNFRSF4/CD134/OX40 | Therapeutic SAbDab (2024-09-13) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
C [auth G] | PF00020 | TNFR/NGFR cysteine-rich region (TNFR_c6) | TNFR/NGFR cysteine-rich region | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
C [auth G] | IPR020445 | Tumour necrosis factor receptor 4 | Family |
C [auth G] | IPR001368 | TNFR/NGFR cysteine-rich region | Domain |
C [auth G] | IPR034022 | Tumour necrosis factor receptor 4, N-terminal | Domain |
Pharos: Disease Associations Pharos Homepage Annotation
Chains | Drug Target   | Associated Disease |
---|---|---|
C [auth G] | P43489 | :