Annotations: 6NZ0

Cryo-EM structure of AAV-2 in complex with AAVR PKD domains 1 and 2

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B [auth A]	d6nz0a_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	ssDNA viruses	Parvoviridae-like VP	automated matches	isolate Srivastava/1982 (Adeno-associated virus 2 Srivastava/1982 ) [TaxId: 648242 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B [auth A]	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B [auth A]	ANAPC4_WD40, Beta-prop_WDR36-Utp21_1st	e6nz0A1	A: beta barrels	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: ANAPC4_WD40, Beta-prop_WDR36-Utp21_1st	ECOD (v294.2)
A [auth Z]	ANAPC4_WD40, Beta-prop_WDR36-Utp21_1st	e6nz0Z1	A: beta barrels	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: ANAPC4_WD40, Beta-prop_WDR36-Utp21_1st	ECOD (v294.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B [auth A]	2.170.30.10	Mainly Beta	Beta Complex	Empty Capsid Viral Protein 2	Parvovirus coat protein VP1/VP2	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth Z]	PF22352	K319L-like, PKD domain (K319L-like_PKD)	K319L-like, PKD domain	This entry represents the PKD domain of Dyslexia-associated protein KIAA0319-like protein, in which it is found in four copies. This entry also includes Kunitz-type protease inhibitor 1 and LRP11 from human.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth A]	Capsid protein VP1	structural molecule activity	import into cell receptor-mediated endocytosis of virus by host cell biological process involved in interspecies interaction between organisms transport viral life cycle establishment of localization vesicle-mediated transport biological process involved in interaction with host biological process involved in symbiotic interaction localization symbiont entry into host cell clathrin-dependent endocytosis viral process symbiont entry into host import into cell receptor-mediated endocytosis of virus by host cell biological process involved in interspecies interaction between organisms transport viral life cycle establishment of localization vesicle-mediated transport biological process involved in interaction with host biological process involved in symbiotic interaction localization symbiont entry into host cell clathrin-dependent endocytosis viral process symbiont entry into host cellular process clathrin-dependent endocytosis of virus by host cell receptor-mediated endocytosis endocytosis endocytosis involved in viral entry into host cell virion attachment to host cell adhesion of symbiont to host cell adhesion of symbiont to host symbiont-mediated disruption of host anatomical structure symbiont entry into host cell via permeabilization of host membrane symbiont-mediated disruption of host cellular anatomical structure symbiont-mediated perturbation of host membrane disruption of anatomical structure in another organism	viral capsid icosahedral viral capsid virion component T=1 icosahedral viral capsid host intracellular membrane-bounded organelle host cellular component host intracellular part host cell nucleus other organism part host cell nucleolus host cell nuclear part host intracellular organelle cellular anatomical structure host cell part viral capsid icosahedral viral capsid virion component T=1 icosahedral viral capsid host intracellular membrane-bounded organelle host cellular component host intracellular part host cell nucleus other organism part host cell nucleolus host cell nuclear part host intracellular organelle cellular anatomical structure host cell part host intracellular region
A [auth Z]	Dyslexia-associated protein KIAA0319-like protein	-	response to auditory stimulus response to stimulus response to mechanical stimulus response to abiotic stimulus response to external stimulus import into cell receptor-mediated endocytosis of virus by host cell biological process involved in interspecies interaction between organisms transport viral life cycle establishment of localization biological process involved in interaction with host vesicle-mediated transport biological process involved in symbiotic interaction response to auditory stimulus response to stimulus response to mechanical stimulus response to abiotic stimulus response to external stimulus import into cell receptor-mediated endocytosis of virus by host cell biological process involved in interspecies interaction between organisms transport viral life cycle establishment of localization biological process involved in interaction with host vesicle-mediated transport biological process involved in symbiotic interaction localization symbiont entry into host cell viral process symbiont entry into host cellular process endocytosis involved in viral entry into host cell receptor-mediated endocytosis endocytosis developmental process multicellular organismal process neuron migration cellular developmental process nervous system development generation of neurons neurogenesis multicellular organism development cell differentiation anatomical structure development cell migration cell motility system development spermatid development spermatid differentiation sexual reproduction spermatogenesis cellular component assembly involved in morphogenesis reproductive process membrane fusion organelle membrane fusion cell development cellular process involved in reproduction in multicellular organism developmental process involved in reproduction gamete generation cellular component organization cellular component biogenesis vesicle organization cellular anatomical entity morphogenesis cellular component assembly proacrosomal vesicle fusion cellular component organization or biogenesis endomembrane system organization membrane organization organelle assembly secretory granule organization multicellular organismal reproductive process male gamete generation organelle fusion anatomical structure morphogenesis organelle organization anatomical structure formation involved in morphogenesis germ cell development vesicle fusion acrosome assembly sperm motility cilium movement involved in cell motility cilium or flagellum-dependent cell motility cilium-dependent cell motility flagellated sperm motility microtubule-based movement microtubule-based process cilium movement	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure cytoplasmic vesicle organelle intracellular vesicle cytoplasm intracellular membrane-bounded organelle vesicle nucleus membrane-enclosed lumen intracellular membraneless organelle nucleolus membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure cytoplasmic vesicle organelle intracellular vesicle cytoplasm intracellular membrane-bounded organelle vesicle nucleus membrane-enclosed lumen intracellular membraneless organelle nucleolus intracellular organelle lumen organelle lumen membraneless organelle nuclear lumen membrane Golgi apparatus endomembrane system Golgi membrane bounding membrane of organelle organelle membrane Golgi apparatus subcompartment organelle subcompartment trans-Golgi network membrane trans-Golgi network cell periphery plasma membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth A]	IPR013607	Phospholipase A2-like domain	Domain
B [auth A]	IPR016184	Capsid/spike protein, ssDNA virus	Homologous Superfamily
B [auth A]	IPR001403	Coat protein VP1/VP2, Parvovirus	Domain
B [auth A]	IPR036952	Parvovirus coat protein VP1/VP2	Homologous Superfamily
A [auth Z]	IPR022409	PKD/Chitinase domain	Domain
A [auth Z]	IPR000601	PKD domain	Domain
A [auth Z]	IPR035986	PKD domain superfamily	Homologous Superfamily
A [auth Z]	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A [auth Z]	IPR056502	KIAA0319-like, C-terminal domain	Domain
A [auth Z]	IPR029865	Dyslexia-associated protein KIAA0319-like	Family
A [auth Z]	IPR013980	MANSC domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A [auth Z]	: Q8IZA0	limited scleroderma systemic sclerosis CREST syndrome osteosarcoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia diffuse scleroderma ovarian cancer systemic lupus erythematosus pancreatic intraductal papillary-mucinous carcinoma

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