6MDP
The D1 and D2 domain rings of NSF engaging the SNAP-25 N-terminus within the 20S supercomplex (focused refinement on D1/D2 rings, class 2)
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | RecA-like P-loop NTPases | 8044318 | 3002019 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | RecA-like P-loop NTPases | 8044318 | 3002019 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | RecA-like P-loop NTPases | 8044318 | 3002019 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | RecA-like P-loop NTPases | 8044318 | 3002019 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | RecA-like P-loop NTPases | 8044318 | 3002019 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | RecA-like P-loop NTPases | 8044318 | 3002019 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | KOG0741 | e6mdpA4 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: KOG0741 | ECOD (1.6) |
A | PRK03992 | e6mdpA3 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PRK03992 | ECOD (1.6) |
A | AAA | e6mdpA2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: AAA | ECOD (1.6) |
A | AAA_11_1 | e6mdpA1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: AAA_11_1 | ECOD (1.6) |
B | KOG0741 | e6mdpB1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: KOG0741 | ECOD (1.6) |
B | PRK03992 | e6mdpB3 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PRK03992 | ECOD (1.6) |
B | AAA | e6mdpB4 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: AAA | ECOD (1.6) |
B | AAA_11_1 | e6mdpB2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: AAA_11_1 | ECOD (1.6) |
C | KOG0741 | e6mdpC4 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: KOG0741 | ECOD (1.6) |
C | PRK03992 | e6mdpC2 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PRK03992 | ECOD (1.6) |
C | AAA | e6mdpC1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: AAA | ECOD (1.6) |
C | AAA_11_1 | e6mdpC3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: AAA_11_1 | ECOD (1.6) |
D | KOG0741 | e6mdpD2 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: KOG0741 | ECOD (1.6) |
D | PRK03992 | e6mdpD3 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PRK03992 | ECOD (1.6) |
D | AAA | e6mdpD1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: AAA | ECOD (1.6) |
D | AAA_11_1 | e6mdpD4 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: AAA_11_1 | ECOD (1.6) |
E | KOG0741 | e6mdpE4 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: KOG0741 | ECOD (1.6) |
E | PRK03992 | e6mdpE3 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PRK03992 | ECOD (1.6) |
E | AAA | e6mdpE1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: AAA | ECOD (1.6) |
E | AAA_11_1 | e6mdpE2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: AAA_11_1 | ECOD (1.6) |
F | KOG0741 | e6mdpF1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: KOG0741 | ECOD (1.6) |
F | AAA_11_1 | e6mdpF2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: AAA_11_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
F | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
F | 1.10.8.60 | Mainly Alpha | Orthogonal Bundle | Helicase, Ruva Protein | domain 3 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF17862 | AAA+ lid domain (AAA_lid_3) | AAA+ lid domain | This entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. | Domain | |
PF00004 | ATPase family associated with various cellular activities (AAA) (AAA) | ATPase family associated with various cellular activities (AAA) | AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. | Domain | |
PF21964 | NSF, AAA+ ATPase lid domain (NSF_ATPase_lid) | NSF, AAA+ ATPase lid domain | This entry represents the ATPase lid domain of the second AAA+ ATP-binding domain (also known as D2) of NSF proteins [1], found at the C-terminal. NFS proteins are essential membrane fusion events. They play the role of a chaperone by activating SNAP ... | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR004201 | CDC48, domain 2 | Domain | |
IPR009010 | Aspartate decarboxylase-like domain superfamily | Homologous Superfamily | |
IPR003593 | AAA+ ATPase domain | Domain | |
IPR003959 | ATPase, AAA-type, core | Domain | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily | |
IPR029067 | CDC48 domain 2-like superfamily | Homologous Superfamily | |
IPR041569 | AAA ATPase, AAA+ lid domain | Domain | |
IPR039812 | Vesicle-fusing ATPase | Family | |
IPR003960 | ATPase, AAA-type, conserved site | Conserved Site | |
IPR003338 | CDC48, N-terminal subdomain | Domain | |
G [auth H] | IPR000727 | Target SNARE coiled-coil homology domain | Domain |
G [auth H] | IPR039077 | SNAP25, N-terminal SNARE motif, chordates | Domain |
G [auth H] | IPR000928 | SNAP-25 domain | Domain |