6IBL
ACTIVATED TURKEY BETA1 ADRENOCEPTOR WITH BOUND AGONIST FORMOTEROL AND NANOBODY Nb80
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- IMGT Antibody Annotation
- SAbDab Antibody Annotation
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: MemProtMD
- Membrane Protein Annotation: mpstruc
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth C] | d6iblc1 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | V set domains (antibody variable domain-like) | automated matches | llama (Lama glama ) [TaxId: 9844 ], | SCOPe (2.08) |
B [auth C] | d6iblc2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | llama (Lama glama ) [TaxId: 9844 ], | SCOPe (2.08) |
D | d6ibld1 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | V set domains (antibody variable domain-like) | automated matches | llama (Lama glama ) [TaxId: 9844 ], | SCOPe (2.08) |
D | d6ibld2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | llama (Lama glama ) [TaxId: 9844 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | G protein-coupled receptor-like | 8091152 | 3000473 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Thioredoxin-like | 8044359 | 3000031 | SCOP2B (2022-06-29) |
C [auth B] | SCOP2B Superfamily | Thioredoxin-like | 8044359 | 3000031 | SCOP2B (2022-06-29) |
C [auth B] | SCOP2B Superfamily | G protein-coupled receptor-like | 8091152 | 3000473 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | 7tm_1_3 | e6iblA1 | A: alpha bundles | X: Family A G protein-coupled receptor-like (From Topology) | H: Family A G protein-coupled receptor-like (From Topology) | T: Family A G protein-coupled receptor-like | F: 7tm_1_3 | ECOD (1.6) |
A | UNK_F_TYPE | e6iblA2 | A: alpha bundles | X: Four-helical up-and-down bundle | H: Cytochromes (From Topology) | T: Cytochromes | F: UNK_F_TYPE | ECOD (1.6) |
A | Thioredoxin | e6iblA3 | A: a+b three layers | X: Thioredoxin-like | H: Thioredoxin-like (From Topology) | T: Thioredoxin-like | F: Thioredoxin | ECOD (1.6) |
C [auth B] | 7tm_1_3 | e6iblB1 | A: alpha bundles | X: Family A G protein-coupled receptor-like (From Topology) | H: Family A G protein-coupled receptor-like (From Topology) | T: Family A G protein-coupled receptor-like | F: 7tm_1_3 | ECOD (1.6) |
C [auth B] | UNK_F_TYPE | e6iblB2 | A: alpha bundles | X: Four-helical up-and-down bundle | H: Cytochromes (From Topology) | T: Cytochromes | F: UNK_F_TYPE | ECOD (1.6) |
C [auth B] | Thioredoxin | e6iblB3 | A: a+b three layers | X: Thioredoxin-like | H: Thioredoxin-like (From Topology) | T: Thioredoxin-like | F: Thioredoxin | ECOD (1.6) |
B [auth C] | V-set_1 | e6iblC1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_1 | ECOD (1.6) |
D | V-set_1 | e6iblD1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_1 | ECOD (1.6) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
B [auth C], D | Camelid antibody fragment Nb80 | VH | Lama glama (llama) | IGHV3S3*01, IGHJ4*01 | V-DOMAIN VH | IG | VH | IMGT (202432-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
B [auth C], D | Heavy Chain | IGHV1 | - | thioredoxin 1,beta-1 adrenergic receptor | SAbDab (2024-08-16) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, C [auth B] | PF00085 | Thioredoxin (Thioredoxin) | Thioredoxin | Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Some members with only the active site are not separated from the noise. | Domain |
A, C [auth B] | PF00001 | 7 transmembrane receptor (rhodopsin family) (7tm_1) | 7 transmembrane receptor (rhodopsin family) | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, C [auth B] | IPR000276 | G protein-coupled receptor, rhodopsin-like | Family |
A, C [auth B] | IPR002233 | Adrenoceptor family | Family |
A, C [auth B] | IPR017452 | GPCR, rhodopsin-like, 7TM | Domain |
A, C [auth B] | IPR000507 | Beta 1 adrenoceptor | Family |
A, C [auth B] | IPR017937 | Thioredoxin, conserved site | Conserved Site |
A, C [auth B] | IPR013766 | Thioredoxin domain | Domain |
A, C [auth B] | IPR005746 | Thioredoxin | Family |
A, C [auth B] | IPR036249 | Thioredoxin-like superfamily | Homologous Superfamily |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Chains | External Link | Comment |
---|---|---|
PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
Chains | External Link | Comment |
---|---|---|
MemProtMD | Annotated as membrane protein by MemProtMD |