6GEN
Chromatin remodeller-nucleosome complex at 4.5 A resolution.
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B [auth A] | SCOP2B Superfamily | Core histone-like | 8036585 | 3001387 | SCOP2B (2021-05-27) |
C [auth B] | SCOP2B Superfamily | Core histone-like | 8036585 | 3001387 | SCOP2B (2021-05-27) |
D [auth C] | SCOP2B Superfamily | Core histone-like | 8036586 | 3001387 | SCOP2B (2021-05-27) |
E [auth D] | SCOP2B Superfamily | Core histone-like | 8036586 | 3001387 | SCOP2B (2021-05-27) |
F [auth E] | SCOP2B Superfamily | Core histone-like | 8036588 | 3001387 | SCOP2B (2021-05-27) |
G [auth F] | SCOP2B Superfamily | Core histone-like | 8036588 | 3001387 | SCOP2B (2021-05-27) |
H [auth G] | SCOP2B Superfamily | Core histone-like | 8066285 | 3001387 | SCOP2B (2021-05-27) |
I [auth H] | SCOP2B Superfamily | Core histone-like | 8066285 | 3001387 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
O [auth T] | PF06068 | e6genT2 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF06068 | ECOD (1.6) |
O [auth T] | PF17856 | e6genT3 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF17856 | ECOD (1.6) |
O [auth T] | PF06068 | e6genT1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF06068 | ECOD (1.6) |
Q [auth V] | PF06068 | e6genV1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF06068 | ECOD (1.6) |
Q [auth V] | PF17856 | e6genV3 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF17856 | ECOD (1.6) |
Q [auth V] | PF06068 | e6genV2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF06068 | ECOD (1.6) |
S [auth X] | PF06068 | e6genX2 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF06068 | ECOD (1.6) |
S [auth X] | PF17856 | e6genX3 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF17856 | ECOD (1.6) |
S [auth X] | PF06068 | e6genX1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF06068 | ECOD (1.6) |
P [auth U] | PF06068 | e6genU2 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF06068 | ECOD (1.6) |
P [auth U] | PF17856 | e6genU3 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF17856 | ECOD (1.6) |
P [auth U] | PF06068 | e6genU1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF06068 | ECOD (1.6) |
R [auth W] | PF06068 | e6genW3 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF06068 | ECOD (1.6) |
R [auth W] | PF17856 | e6genW1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF17856 | ECOD (1.6) |
R [auth W] | PF06068 | e6genW2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF06068 | ECOD (1.6) |
T [auth Y] | PF06068 | e6genY3 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF06068 | ECOD (1.6) |
T [auth Y] | PF17856 | e6genY1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF17856 | ECOD (1.6) |
T [auth Y] | PF06068 | e6genY2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF06068 | ECOD (1.6) |
B [auth A] | PF00125 | e6genA1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF00125 | ECOD (1.6) |
C [auth B] | PF00125 | e6genB1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF00125 | ECOD (1.6) |
D [auth C] | PF15511 | e6genC1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF15511 | ECOD (1.6) |
E [auth D] | PF15511 | e6genD1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF15511 | ECOD (1.6) |
F [auth E] | PF00125,PF16211 | e6genE1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF00125,PF16211 | ECOD (1.6) |
G [auth F] | PF00125,PF16211 | e6genF1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF00125,PF16211 | ECOD (1.6) |
H [auth G] | PF00125 | e6genG1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF00125 | ECOD (1.6) |
I [auth H] | PF00125 | e6genH1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF00125 | ECOD (1.6) |
M [auth R] | PF00022 | e6genR2 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF00022 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B [auth A] | 1.10.20.10 | Mainly Alpha | Orthogonal Bundle | Histone, subunit A | Histone, subunit A | CATH (4.3.0) |
C [auth B] | 1.10.20.10 | Mainly Alpha | Orthogonal Bundle | Histone, subunit A | Histone, subunit A | CATH (4.3.0) |
D [auth C] | 1.10.20.10 | Mainly Alpha | Orthogonal Bundle | Histone, subunit A | Histone, subunit A | CATH (4.3.0) |
E [auth D] | 1.10.20.10 | Mainly Alpha | Orthogonal Bundle | Histone, subunit A | Histone, subunit A | CATH (4.3.0) |
F [auth E] | 1.10.20.10 | Mainly Alpha | Orthogonal Bundle | Histone, subunit A | Histone, subunit A | CATH (4.3.0) |
G [auth F] | 1.10.20.10 | Mainly Alpha | Orthogonal Bundle | Histone, subunit A | Histone, subunit A | CATH (4.3.0) |
H [auth G] | 1.10.20.10 | Mainly Alpha | Orthogonal Bundle | Histone, subunit A | Histone, subunit A | CATH (4.3.0) |
I [auth H] | 1.10.20.10 | Mainly Alpha | Orthogonal Bundle | Histone, subunit A | Histone, subunit A | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
O [auth T], Q [auth V], S [auth X] | PF06068 | TIP49 P-loop domain (TIP49) | TIP49 P-loop domain | This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the Pfam:PF00004 domain. In zebrafish, the liebeskummer (lik) ... | Domain |
O [auth T], Q [auth V], S [auth X] | PF17856 | TIP49 AAA-lid domain (TIP49_C) | TIP49 AAA-lid domain | This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the Pfam:PF00004 domain. In zebrafish, the liebeskummer (lik) ... | Domain |
P [auth U], R [auth W], T [auth Y] | PF06068 | TIP49 P-loop domain (TIP49) | TIP49 P-loop domain | This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the Pfam:PF00004 domain. In zebrafish, the liebeskummer (lik) ... | Domain |
P [auth U], R [auth W], T [auth Y] | PF17856 | TIP49 AAA-lid domain (TIP49_C) | TIP49 AAA-lid domain | This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the Pfam:PF00004 domain. In zebrafish, the liebeskummer (lik) ... | Domain |
F [auth E], G [auth F] | PF16211 | C-terminus of histone H2A (Histone_H2A_C) | C-terminus of histone H2A | - | Family |
L [auth M] | PF00271 | Helicase conserved C-terminal domain (Helicase_C) | Helicase conserved C-terminal domain | The Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. | Domain |
L [auth M] | PF00176 | SNF2-related domain (SNF2-rel_dom) | SNF2-related domain | This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as w ... | Domain |