6DG8
Full-length 5-HT3A receptor in a serotonin-bound conformation- State 2
External Resource: Annotation
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: OPM
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: MemProtMD
- Membrane Protein Annotation: mpstruc
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
D | Neur_chan_LBD | e6dg8D2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Nicotinic receptor ligand binding domain-like (From Topology) | T: Nicotinic receptor ligand binding domain-like | F: Neur_chan_LBD | ECOD (1.6) |
D | Neur_chan_memb | e6dg8D1 | A: alpha bundles | X: Neurotransmitter-gated ion-channel transmembrane pore (From Topology) | H: Neurotransmitter-gated ion-channel transmembrane pore (From Topology) | T: Neurotransmitter-gated ion-channel transmembrane pore | F: Neur_chan_memb | ECOD (1.6) |
A | Neur_chan_LBD | e6dg8A2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Nicotinic receptor ligand binding domain-like (From Topology) | T: Nicotinic receptor ligand binding domain-like | F: Neur_chan_LBD | ECOD (1.6) |
A | Neur_chan_memb | e6dg8A1 | A: alpha bundles | X: Neurotransmitter-gated ion-channel transmembrane pore (From Topology) | H: Neurotransmitter-gated ion-channel transmembrane pore (From Topology) | T: Neurotransmitter-gated ion-channel transmembrane pore | F: Neur_chan_memb | ECOD (1.6) |
B | Neur_chan_LBD | e6dg8B2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Nicotinic receptor ligand binding domain-like (From Topology) | T: Nicotinic receptor ligand binding domain-like | F: Neur_chan_LBD | ECOD (1.6) |
B | Neur_chan_memb | e6dg8B1 | A: alpha bundles | X: Neurotransmitter-gated ion-channel transmembrane pore (From Topology) | H: Neurotransmitter-gated ion-channel transmembrane pore (From Topology) | T: Neurotransmitter-gated ion-channel transmembrane pore | F: Neur_chan_memb | ECOD (1.6) |
C | Neur_chan_LBD | e6dg8C1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Nicotinic receptor ligand binding domain-like (From Topology) | T: Nicotinic receptor ligand binding domain-like | F: Neur_chan_LBD | ECOD (1.6) |
C | Neur_chan_memb | e6dg8C2 | A: alpha bundles | X: Neurotransmitter-gated ion-channel transmembrane pore (From Topology) | H: Neurotransmitter-gated ion-channel transmembrane pore (From Topology) | T: Neurotransmitter-gated ion-channel transmembrane pore | F: Neur_chan_memb | ECOD (1.6) |
E | Neur_chan_LBD | e6dg8E1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Nicotinic receptor ligand binding domain-like (From Topology) | T: Nicotinic receptor ligand binding domain-like | F: Neur_chan_LBD | ECOD (1.6) |
E | Neur_chan_memb | e6dg8E2 | A: alpha bundles | X: Neurotransmitter-gated ion-channel transmembrane pore (From Topology) | H: Neurotransmitter-gated ion-channel transmembrane pore (From Topology) | T: Neurotransmitter-gated ion-channel transmembrane pore | F: Neur_chan_memb | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
D | 2.70.170.10 | Mainly Beta | Distorted Sandwich | Acetylcholine Binding Protein | Chain: A, | CATH (4.3.0) |
A | 2.70.170.10 | Mainly Beta | Distorted Sandwich | Acetylcholine Binding Protein | Chain: A, | CATH (4.3.0) |
B | 2.70.170.10 | Mainly Beta | Distorted Sandwich | Acetylcholine Binding Protein | Chain: A, | CATH (4.3.0) |
C | 2.70.170.10 | Mainly Beta | Distorted Sandwich | Acetylcholine Binding Protein | Chain: A, | CATH (4.3.0) |
E | 2.70.170.10 | Mainly Beta | Distorted Sandwich | Acetylcholine Binding Protein | Chain: A, | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02932 | Neurotransmitter-gated ion-channel transmembrane region (Neur_chan_memb) | Neurotransmitter-gated ion-channel transmembrane region | - | Family | |
PF02931 | Neurotransmitter-gated ion-channel ligand binding domain (Neur_chan_LBD) | Neurotransmitter-gated ion-channel ligand binding domain | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR006202 | Neurotransmitter-gated ion-channel ligand-binding domain | Domain | |
IPR036719 | Neurotransmitter-gated ion-channel transmembrane domain superfamily | Homologous Superfamily | |
IPR049944 | 5-hydroxytryptamine 3 receptor, transmembrane domain | Domain | |
IPR006029 | Neurotransmitter-gated ion-channel transmembrane domain | Domain | |
IPR036734 | Neurotransmitter-gated ion-channel ligand-binding domain superfamily | Homologous Superfamily | |
IPR018000 | Neurotransmitter-gated ion-channel, conserved site | Conserved Site | |
IPR038050 | Neuronal acetylcholine receptor | Homologous Superfamily | |
IPR008133 | 5-hydroxytryptamine 3 receptor, A subunit | Family | |
IPR008132 | 5-hydroxytryptamine 3 receptor | Family | |
IPR006201 | Neurotransmitter-gated ion-channel | Family |
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Alpha-helical polytopic | Pentameric ligand-gated ion channels | Ligand-gated ion channel of neurotransmitter receptors |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
Chains | Resource Link | Group | Subgroup | Protein |
---|---|---|---|---|
mpstruc | TRANSMEMBRANE PROTEINS: ALPHA-HELICAL | Cys-Loop Receptor Family | Serotonin 5-HT3A receptor with bound serotonin, State 1 |