6DDM
Crystal Structure Analysis of the Epitope of an Anti-MICA Antibody
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d6ddma2 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | C1 set domains (antibody constant domain-like) | automated matches | (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
A | d6ddma1 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | automated matches | automated matches | (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
B [auth C] | d6ddmc_ | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | automated matches | automated matches | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
C [auth B] | d6ddmb_ | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | automated matches | automated matches | (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B [auth C] | SCOP2B Superfamily | Immunoglobulin (Ig) domain-like | 8100402 | 3000071 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | C1-set_4 | e6ddmA1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_4 | ECOD (1.6) |
A | V-set | e6ddmA2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
B [auth C] | C1-set_2 | e6ddmC1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_2 | ECOD (1.6) |
C [auth B] | V-set_8 | e6ddmB2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
C [auth B] | C1-set_1 | e6ddmB1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
B [auth C] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (utative) |
C [auth B] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
Fab 1D5, anti MICA | L-KAPPA | Mus musculus (house mouse) | IGKV4-91*01, IGKJ5*01, IGKC*03 | V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA | IG | FAB-GAMMA-1_KAPPA | IMGT (202436-0) | |
B [auth C] | Beta-2 Microglobulin | B2M | Homo sapiens (human) | MICA*10, MICA*19, MICA*22, MICA*27, MICA*33, MICA*35, MICA*37, MICA*42, MICA*48, MICA*55, MICA*66, MICA*68, MICA*70, MICA*75, MICA*76 | C-LIKE-DOMAIN C-LIKE | RPI | B2M | IMGT (202436-0) |
C [auth B] | Fab 1D5, anti MICA | VH-CH1 | Mus musculus (house mouse) | IGHV1S135*01, IGHJ2*01, IGHG1*02 | V-DOMAIN VH, C-DOMAIN CH1 | IG | FAB-GAMMA-1_KAPPA | IMGT (202436-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
Light Chain | IGKV4 | Kappa | mhc class i polypeptide-related sequence a | SAbDab (2024-09-13) | |
C [auth B] | Heavy Chain | IGHV1 | - | mhc class i polypeptide-related sequence a | SAbDab (2024-09-13) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
B [auth C] | PF07654 | Immunoglobulin C1-set domain (C1-set) | Immunoglobulin C1-set domain | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Anti-MICA Fab fragment light chain clone 1D5 | - | - | - | |
B [auth C] | MHC class I polypeptide-related sequence A | - | - | |
C [auth B] | Anti-MICA Fab fragment heavy chain clone 1D5 | - | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
B [auth C] | IPR003597 | Immunoglobulin C1-set | Domain |
B [auth C] | IPR013783 | Immunoglobulin-like fold | Homologous Superfamily |
B [auth C] | IPR036179 | Immunoglobulin-like domain superfamily | Homologous Superfamily |
B [auth C] | IPR011161 | MHC class I-like antigen recognition-like | Domain |
B [auth C] | IPR011162 | MHC classes I/II-like antigen recognition protein | Homologous Superfamily |
B [auth C] | IPR007110 | Immunoglobulin-like domain | Domain |
B [auth C] | IPR050208 | Antigen-presenting and immune regulatory MHC class I-related | Family |
B [auth C] | IPR037055 | MHC class I-like antigen recognition-like superfamily | Homologous Superfamily |