Annotations: 6BZE

Cryo-EM structure of BCL10 CARD filament

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
H	SCOP2B Superfamily	DEATH domain	8083260	3000069	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	DEATH domain	8083260	3000069	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	DEATH domain	8083260	3000069	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	DEATH domain	8083260	3000069	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	DEATH domain	8083260	3000069	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	DEATH domain	8083260	3000069	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	DEATH domain	8083260	3000069	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	DEATH domain	8083260	3000069	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	AAA	e6bzeH1	A: alpha arrays	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: AAA	ECOD (v295.2)
G	AAA	e6bzeG1	A: alpha arrays	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: AAA	ECOD (v295.2)
F	AAA	e6bzeF1	A: alpha arrays	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: AAA	ECOD (v295.2)
E	AAA	e6bzeE1	A: alpha arrays	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: AAA	ECOD (v295.2)
D	AAA	e6bzeD1	A: alpha arrays	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: AAA	ECOD (v295.2)
C	AAA	e6bzeC1	A: alpha arrays	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: AAA	ECOD (v295.2)
B	Glycos_transf_1	e6bzeB1	A: alpha arrays	X: FAD-linked reductases, C-terminal domain-like	H: FAD-linked reductases-C	T: FAD-linked reductases-C	F: Glycos_transf_1	ECOD (v295.2)
A	Ribosomal_S13	e6bzeA1	A: alpha arrays	X: FAD-linked reductases, C-terminal domain-like	H: FAD-linked reductases-C	T: FAD-linked reductases-C	F: Ribosomal_S13	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF00619	Caspase recruitment domain (CARD)	Caspase recruitment domain	Motif contained in proteins involved in apoptotic signaling. Predicted to possess a DEATH (Pfam:PF00531) domain-like fold .	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	B-cell lymphoma/leukemia 10	transcription factor binding RNA polymerase II-specific DNA-binding transcription factor binding protein binding binding DNA-binding transcription factor binding NF-kappaB binding protein kinase B binding kinase binding enzyme binding protein kinase binding protein-macromolecule adaptor activity molecular adaptor activity protein-containing complex binding ubiquitin protein ligase binding transcription factor binding RNA polymerase II-specific DNA-binding transcription factor binding protein binding binding DNA-binding transcription factor binding NF-kappaB binding protein kinase B binding kinase binding enzyme binding protein kinase binding protein-macromolecule adaptor activity molecular adaptor activity protein-containing complex binding ubiquitin protein ligase binding ubiquitin-like protein ligase binding identical protein binding general transcription initiation factor binding signaling adaptor activity protease binding transcription coactivator activity transcription regulator activity transcription coregulator activity CARD domain binding protein domain specific binding	response to stimulus immune response immune system process adaptive immune response multicellular organismal process regulation of cellular process regulation of B cell apoptotic process homeostatic process leukocyte apoptotic process negative regulation of biological process regulation of programmed cell death lymphocyte apoptotic process negative regulation of leukocyte apoptotic process negative regulation of mature B cell apoptotic process response to stimulus immune response immune system process adaptive immune response multicellular organismal process regulation of cellular process regulation of B cell apoptotic process homeostatic process leukocyte apoptotic process negative regulation of biological process regulation of programmed cell death lymphocyte apoptotic process negative regulation of leukocyte apoptotic process negative regulation of mature B cell apoptotic process negative regulation of cellular process regulation of immune system process regulation of leukocyte apoptotic process regulation of lymphocyte apoptotic process regulation of biological process mature B cell apoptotic process negative regulation of programmed cell death regulation of apoptotic process biological regulation B cell apoptotic process cell death negative regulation of B cell apoptotic process B cell homeostasis negative regulation of apoptotic process multicellular organismal-level homeostasis leukocyte homeostasis homeostasis of number of cells cellular process regulation of mature B cell apoptotic process lymphocyte homeostasis apoptotic process programmed cell death negative regulation of lymphocyte apoptotic process positive regulation of programmed cell death positive regulation of biological process positive regulation of apoptotic process positive regulation of cellular process biological process involved in interspecies interaction between organisms response to other organism defense response defense response to symbiont response to external stimulus response to biotic stimulus defense response to other organism response to stress innate immune response response to external biotic stimulus cellular response to stimulus signaling non-canonical NF-kappaB signal transduction intracellular signal transduction cell communication intracellular signaling cassette signal transduction embryonic epithelial tube formation chordate embryonic development tube formation embryo development multicellular organism development epithelial tube formation tube morphogenesis primary neural tube formation embryo development ending in birth or egg hatching anatomical structure development epithelial tube morphogenesis system development developmental process morphogenesis of embryonic epithelium epithelium development neural tube development tube development embryonic morphogenesis morphogenesis of an epithelium nervous system development tissue development anatomical structure morphogenesis tissue morphogenesis neural tube closure neural tube formation anatomical structure formation involved in morphogenesis tube closure animal gross anatomical part developmental process positive regulation of interleukin-8 production positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process cytokine production regulation of cytokine production positive regulation of macromolecule metabolic process regulation of multicellular organismal process regulation of biosynthetic process interleukin-8 production regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of gene expression biosynthetic process positive regulation of gene expression positive regulation of multicellular organismal process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process positive regulation of cytokine production regulation of metabolic process regulation of interleukin-8 production positive regulation of cell communication immune response-regulating cell surface receptor signaling pathway positive regulation of signal transduction positive regulation of T cell receptor signaling pathway regulation of antigen receptor-mediated signaling pathway regulation of signal transduction positive regulation of response to stimulus immune response-activating signaling pathway immune response-regulating signaling pathway positive regulation of immune response positive regulation of immune system process regulation of signaling cell surface receptor signaling pathway immune response-activating cell surface receptor signaling pathway regulation of T cell receptor signaling pathway T cell receptor signaling pathway regulation of response to stimulus regulation of immune response regulation of cell communication antigen receptor-mediated signaling pathway activation of immune response positive regulation of antigen receptor-mediated signaling pathway positive regulation of signaling antifungal innate immune response defense response to fungus response to fungus regulation of immune effector process positive regulation of myeloid leukocyte cytokine production involved in immune response mast cell cytokine production positive regulation of immune effector process myeloid leukocyte cytokine production cytokine production involved in immune response production of molecular mediator of immune response regulation of cytokine production involved in immune response regulation of mast cell cytokine production immune effector process positive regulation of cytokine production involved in immune response positive regulation of production of molecular mediator of immune response regulation of production of molecular mediator of immune response positive regulation of mast cell cytokine production positive regulation of canonical NF-kappaB signal transduction regulation of intracellular signal transduction positive regulation of intracellular signal transduction canonical NF-kappaB signal transduction regulation of canonical NF-kappaB signal transduction interleukin-6 production positive regulation of interleukin-6 production regulation of interleukin-6 production response to lipid cellular response to lipopolysaccharide lipopolysaccharide-mediated signaling pathway cellular response to biotic stimulus response to bacterium response to oxygen-containing compound cellular response to molecule of bacterial origin response to lipopolysaccharide cellular response to oxygen-containing compound cellular response to chemical stimulus response to chemical cellular response to lipid response to molecule of bacterial origin regulation of protein modification process positive regulation of protein metabolic process regulation of protein ubiquitination positive regulation of post-translational protein modification regulation of primary metabolic process positive regulation of protein modification process protein ubiquitination protein metabolic process regulation of protein modification by small protein conjugation or removal protein modification process positive regulation of protein modification by small protein conjugation or removal positive regulation of protein ubiquitination regulation of post-translational protein modification regulation of protein metabolic process primary metabolic process macromolecule modification post-translational protein modification protein modification by small protein conjugation protein modification by small protein conjugation or removal extrinsic apoptotic signaling pathway positive regulation of apoptotic signaling pathway positive regulation of extrinsic apoptotic signaling pathway regulation of extrinsic apoptotic signaling pathway apoptotic signaling pathway regulation of apoptotic signaling pathway response to mechanical stimulus response to abiotic stimulus cellular response to mechanical stimulus cellular response to abiotic stimulus cellular response to external stimulus cellular response to environmental stimulus positive regulation of tumor necrosis factor superfamily cytokine production regulation of lymphotoxin A production lymphotoxin A production tumor necrosis factor superfamily cytokine production positive regulation of lymphotoxin A production regulation of tumor necrosis factor superfamily cytokine production positive regulation of DNA-templated transcription RNA metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process nucleobase-containing compound biosynthetic process nucleic acid metabolic process positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process regulation of DNA-templated transcription cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein complex oligomerization protein-containing complex assembly protein homooligomerization cellular component organization or biogenesis regulation of defense response positive regulation of response to biotic stimulus regulation of response to biotic stimulus pattern recognition receptor signaling pathway regulation of response to external stimulus toll-like receptor signaling pathway positive regulation of response to external stimulus regulation of response to stress innate immune response-activating signaling pathway positive regulation of innate immune response regulation of innate immune response positive regulation of defense response activation of innate immune response response to nutrient levels response to food	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol perinuclear region of cytoplasm protein-containing complex polkadots CBM complex intracellular protein-containing complex membrane microdomain membrane raft membrane membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure cytoplasm cytosol perinuclear region of cytoplasm protein-containing complex polkadots CBM complex intracellular protein-containing complex membrane microdomain membrane raft membrane membrane-bounded organelle intracellular organelle organelle lytic vacuole vacuole intracellular membrane-bounded organelle lysosome cell periphery immunological synapse plasma membrane polymeric cytoskeletal fiber intracellular membraneless organelle cytoplasmic microtubule cytoskeleton membraneless organelle supramolecular fiber microtubule supramolecular polymer supramolecular complex microtubule cytoskeleton nucleus

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR042143	BCL10, CARD domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR011029	Death-like domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR033238	B-cell lymphoma/leukemia 10/E10	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR001315	CARD domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D, E A, B, C, D, E, F, G, H	: O95999	MALT lymphoma immunodeficiency 37 testicular germ cell tumor malignant mesothelioma follicular lymphoma Lymphoma, Mixed-Cell lymphosarcoma malignant pancreatic neoplasm acute T cell leukemia non-Hodgkin lymphoma colorectal cancer pancreatic intraductal papillary-mucinous carcinoma testicular cancer lung cancer astrocytic tumor MALT lymphoma immunodeficiency 37 testicular germ cell tumor malignant mesothelioma follicular lymphoma Lymphoma, Mixed-Cell lymphosarcoma malignant pancreatic neoplasm acute T cell leukemia non-Hodgkin lymphoma colorectal cancer pancreatic intraductal papillary-mucinous carcinoma testicular cancer lung cancer astrocytic tumor oligodendroglioma dermatomyositis pancreatic intraductal papillary-mucinous neoplasm reticulum cell sarcoma lymphoma, non-Hodgkin, familial marginal zone lymphoma cancer pancreatic ductal adenocarcinoma diabetes mellitus follicular lymphoma, susceptibility to, 1 teratoma

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.