6ZXV
Structure of Archaeoglobus fulgidus Trm11 m2G10 tRNA methyltransferase enzyme bound to sinefungin
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | F_UNCLASSIFIED | e6zxvA3 | A: a+b two layers | X: Alpha-beta plaits | H: Ferredoxin-like domain in ThiI (From Topology) | T: Ferredoxin-like domain in ThiI | F: F_UNCLASSIFIED | ECOD (1.6) |
A | THUMP | e6zxvA1 | A: a+b two layers | X: THUMP domain-like (From Topology) | H: THUMP domain-like (From Topology) | T: THUMP domain-like | F: THUMP | ECOD (1.6) |
A | UPF0020 | e6zxvA2 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: UPF0020 | ECOD (1.6) |
B | F_UNCLASSIFIED | e6zxvB3 | A: a+b two layers | X: Alpha-beta plaits | H: Ferredoxin-like domain in ThiI (From Topology) | T: Ferredoxin-like domain in ThiI | F: F_UNCLASSIFIED | ECOD (1.6) |
B | THUMP | e6zxvB1 | A: a+b two layers | X: THUMP domain-like (From Topology) | H: THUMP domain-like (From Topology) | T: THUMP domain-like | F: THUMP | ECOD (1.6) |
B | UPF0020 | e6zxvB2 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: UPF0020 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01170 | RMKL-like, methyltransferase domain (UPF0020) | RMKL-like, methyltransferase domain | This domain is the methyltransferase domain found in ribosomal RNA large subunit methyltransferase K/L from Escherichia coli (RmlKL), tRNA (guanine(10)-N2)-dimethyltransferase from Methanocaldococcus jannaschii and similar proteins, which have a THU ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR004114 | THUMP domain | Domain | |
IPR005885 | tRNA guanine(10)-N2-dimethyltransferase | Family | |
IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase superfamily | Homologous Superfamily | |
IPR000241 | Ribosomal RNA large subunit methyltransferase K/L-like, methyltransferase domain | Domain |