Annotations: 6ZJJ

Topological model of p2 virion baseplate in resting conformation

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B [auth A]	SCOP2B Superfamily	Bacteriophage trimeric proteins domain	8036194	3000915	SCOP2B (2022-06-29)
B [auth A]	SCOP2B Superfamily	Virus attachment protein globular domain	8036189	3001376	SCOP2B (2022-06-29)
B [auth A]	SCOP2B Superfamily	Phage fibre proteins	8036192	3000351	SCOP2B (2022-06-29)
C [auth B]	SCOP2B Superfamily	Bacteriophage trimeric proteins domain	8036194	3000915	SCOP2B (2022-06-29)
C [auth B]	SCOP2B Superfamily	Virus attachment protein globular domain	8036189	3001376	SCOP2B (2022-06-29)
C [auth B]	SCOP2B Superfamily	Phage fibre proteins	8036192	3000351	SCOP2B (2022-06-29)
D [auth C]	SCOP2B Superfamily	Phage fibre proteins	8036192	3000351	SCOP2B (2022-06-29)
D [auth C]	SCOP2B Superfamily	Bacteriophage trimeric proteins domain	8036194	3000915	SCOP2B (2022-06-29)
D [auth C]	SCOP2B Superfamily	Virus attachment protein globular domain	8036189	3001376	SCOP2B (2022-06-29)
F [auth D]	SCOP2B Superfamily	Phage fibre proteins	8036192	3000351	SCOP2B (2022-06-29)
F [auth D]	SCOP2B Superfamily	Bacteriophage trimeric proteins domain	8036194	3000915	SCOP2B (2022-06-29)
F [auth D]	SCOP2B Superfamily	Virus attachment protein globular domain	8036189	3001376	SCOP2B (2022-06-29)
G [auth E]	SCOP2B Superfamily	Virus attachment protein globular domain	8036189	3001376	SCOP2B (2022-06-29)
G [auth E]	SCOP2B Superfamily	Phage fibre proteins	8036192	3000351	SCOP2B (2022-06-29)
G [auth E]	SCOP2B Superfamily	Bacteriophage trimeric proteins domain	8036194	3000915	SCOP2B (2022-06-29)
J [auth G]	SCOP2B Superfamily	Phage fibre proteins	8036192	3000351	SCOP2B (2022-06-29)
J [auth G]	SCOP2B Superfamily	Bacteriophage trimeric proteins domain	8036194	3000915	SCOP2B (2022-06-29)
J [auth G]	SCOP2B Superfamily	Virus attachment protein globular domain	8036189	3001376	SCOP2B (2022-06-29)
K [auth H]	SCOP2B Superfamily	Phage fibre proteins	8036192	3000351	SCOP2B (2022-06-29)
K [auth H]	SCOP2B Superfamily	Bacteriophage trimeric proteins domain	8036194	3000915	SCOP2B (2022-06-29)
K [auth H]	SCOP2B Superfamily	Virus attachment protein globular domain	8036189	3001376	SCOP2B (2022-06-29)
L [auth I]	SCOP2B Superfamily	Phage fibre proteins	8036192	3000351	SCOP2B (2022-06-29)
L [auth I]	SCOP2B Superfamily	Bacteriophage trimeric proteins domain	8036194	3000915	SCOP2B (2022-06-29)
L [auth I]	SCOP2B Superfamily	Virus attachment protein globular domain	8036189	3001376	SCOP2B (2022-06-29)
N [auth J]	SCOP2B Superfamily	Virus attachment protein globular domain	8036189	3001376	SCOP2B (2022-06-29)
N [auth J]	SCOP2B Superfamily	Phage fibre proteins	8036192	3000351	SCOP2B (2022-06-29)
N [auth J]	SCOP2B Superfamily	Bacteriophage trimeric proteins domain	8036194	3000915	SCOP2B (2022-06-29)
O [auth K]	SCOP2B Superfamily	Virus attachment protein globular domain	8036189	3001376	SCOP2B (2022-06-29)
O [auth K]	SCOP2B Superfamily	Phage fibre proteins	8036192	3000351	SCOP2B (2022-06-29)
O [auth K]	SCOP2B Superfamily	Bacteriophage trimeric proteins domain	8036194	3000915	SCOP2B (2022-06-29)
P [auth L]	SCOP2B Superfamily	Bacteriophage trimeric proteins domain	8036194	3000915	SCOP2B (2022-06-29)
P [auth L]	SCOP2B Superfamily	Virus attachment protein globular domain	8036189	3001376	SCOP2B (2022-06-29)
P [auth L]	SCOP2B Superfamily	Phage fibre proteins	8036192	3000351	SCOP2B (2022-06-29)
R [auth M]	SCOP2B Superfamily	Virus attachment protein globular domain	8036189	3001376	SCOP2B (2022-06-29)
R [auth M]	SCOP2B Superfamily	Bacteriophage trimeric proteins domain	8036194	3000915	SCOP2B (2022-06-29)
R [auth M]	SCOP2B Superfamily	Phage fibre proteins	8036192	3000351	SCOP2B (2022-06-29)
S [auth N]	SCOP2B Superfamily	Bacteriophage trimeric proteins domain	8036194	3000915	SCOP2B (2022-06-29)
S [auth N]	SCOP2B Superfamily	Virus attachment protein globular domain	8036189	3001376	SCOP2B (2022-06-29)
S [auth N]	SCOP2B Superfamily	Phage fibre proteins	8036192	3000351	SCOP2B (2022-06-29)
T [auth O]	SCOP2B Superfamily	Phage fibre proteins	8036192	3000351	SCOP2B (2022-06-29)
T [auth O]	SCOP2B Superfamily	Bacteriophage trimeric proteins domain	8036194	3000915	SCOP2B (2022-06-29)
T [auth O]	SCOP2B Superfamily	Virus attachment protein globular domain	8036189	3001376	SCOP2B (2022-06-29)
V [auth P]	SCOP2B Superfamily	Bacteriophage trimeric proteins domain	8036194	3000915	SCOP2B (2022-06-29)
V [auth P]	SCOP2B Superfamily	Virus attachment protein globular domain	8036189	3001376	SCOP2B (2022-06-29)
V [auth P]	SCOP2B Superfamily	Phage fibre proteins	8036192	3000351	SCOP2B (2022-06-29)
W [auth Q]	SCOP2B Superfamily	Phage fibre proteins	8036192	3000351	SCOP2B (2022-06-29)
W [auth Q]	SCOP2B Superfamily	Bacteriophage trimeric proteins domain	8036194	3000915	SCOP2B (2022-06-29)
W [auth Q]	SCOP2B Superfamily	Virus attachment protein globular domain	8036189	3001376	SCOP2B (2022-06-29)
X [auth R]	SCOP2B Superfamily	Bacteriophage trimeric proteins domain	8036194	3000915	SCOP2B (2022-06-29)
X [auth R]	SCOP2B Superfamily	Virus attachment protein globular domain	8036189	3001376	SCOP2B (2022-06-29)
X [auth R]	SCOP2B Superfamily	Phage fibre proteins	8036192	3000351	SCOP2B (2022-06-29)
H [auth F]	SCOP2B Superfamily	Phage fibre proteins	8036192	3000351	SCOP2B (2022-06-29)
H [auth F]	SCOP2B Superfamily	Virus attachment protein globular domain	8036189	3001376	SCOP2B (2022-06-29)
H [auth F]	SCOP2B Superfamily	Bacteriophage trimeric proteins domain	8036194	3000915	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
EA [auth Y]	PA14	e6zjjY1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.2)
FA [auth Z]	PA14	e6zjjZ1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.2)
GA [auth 1]	PA14	e6zjj11	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.2)
B [auth A]	PA14	e6zjjA1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.2)
C [auth B]	PA14	e6zjjB1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.2)
D [auth C]	PA14	e6zjjC1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.2)
F [auth D]	PA14	e6zjjD1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.2)
G [auth E]	PA14	e6zjjE1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.2)
J [auth G]	PA14	e6zjjG1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.2)
K [auth H]	PA14	e6zjjH1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.2)
L [auth I]	PA14	e6zjjI1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.2)
N [auth J]	PA14	e6zjjJ1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.2)
O [auth K]	PA14	e6zjjK1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.2)
P [auth L]	PA14	e6zjjL1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.2)
R [auth M]	PA14	e6zjjM1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.2)
S [auth N]	PA14	e6zjjN1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.2)
T [auth O]	PA14	e6zjjO1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.2)
V [auth P]	PA14	e6zjjP1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.2)
W [auth Q]	PA14	e6zjjQ1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.2)
X [auth R]	PA14	e6zjjR1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.2)
H [auth F]	PA14	e6zjjF1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.2)
A [auth T]	PA14	e6zjjT1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.2)
AA [auth 4]	PA14	e6zjj41	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.2)
BA [auth 5]	PA14	e6zjj51	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.2)
CA [auth 6]	PA14	e6zjj61	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.2)
I [auth U]	PA14	e6zjjU1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.2)
Y [auth 2]	PA14	e6zjj21	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.2)
Z [auth 3]	PA14	e6zjj31	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.2)
U [auth X]	PA14	e6zjjX1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.2)
Q [auth W]	PA14	e6zjjW1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.2)
M [auth V]	PA14	e6zjjV1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.2)
E [auth S]	PA14	e6zjjS1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.2)
DA [auth 7]	PA14	e6zjj71	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: PA14	ECOD (v294.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
EA [auth Y], FA [auth Z], GA [auth 1]	Baseplate protein gp16	-	symbiont genome ejection through host cell envelope biological process involved in interspecies interaction between organisms symbiont genome ejection through host cell envelope, long flexible tail mechanism symbiont entry into host cell viral process symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction	virus tail virion component virus tail, baseplate
B [auth A], C [auth B], D [auth C], F [auth D], G [auth E], B [auth A], C [auth B], D [auth C], F [auth D], G [auth E], H [auth F], J [auth G], K [auth H], L [auth I], N [auth J], O [auth K], P [auth L], R [auth M], S [auth N], T [auth O], V [auth P], W [auth Q], X [auth R]	Receptor binding protein	-	virion attachment to host cell biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell viral process viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction receptor-mediated virion attachment to host cell entry receptor-mediated virion attachment to host cell cell adhesion cellular process symbiont entry into host cell symbiont entry into host	virus tail virion component virus tail, baseplate
A [auth T], AA [auth 4], BA [auth 5], CA [auth 6], DA [auth 7], A [auth T], AA [auth 4], BA [auth 5], CA [auth 6], DA [auth 7], E [auth S], I [auth U], M [auth V], Q [auth W], U [auth X], Y [auth 2], Z [auth 3]	Distal tail protein	-	symbiont genome ejection through host cell envelope biological process involved in interspecies interaction between organisms symbiont genome ejection through host cell envelope, long flexible tail mechanism symbiont entry into host cell viral process symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction	virus tail virion component

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
EA [auth Y], FA [auth Z], GA [auth 1]	IPR048782	Phage tail base-plate attachment protein, C-terminal barrel domain	Domain
EA [auth Y], FA [auth Z], GA [auth 1]	IPR043073	Baseplate protein Gp16, domain D4	Homologous Superfamily
EA [auth Y], FA [auth Z], GA [auth 1]	IPR048784	Phage tail base-plate attachment protein, N0 domain	Domain
EA [auth Y], FA [auth Z], GA [auth 1]	IPR048783	Phage tail base-plate attachment protein, C-terminal insertion domain	Domain
EA [auth Y], FA [auth Z], GA [auth 1]	IPR043075	Baseplate protein Gp16, domain 1 and 2	Homologous Superfamily
EA [auth Y], FA [auth Z], GA [auth 1]	IPR031861	Phage tail base-plate attachment protein, N-terminal barrel domain	Domain
B [auth A], C [auth B], D [auth C], F [auth D], G [auth E], B [auth A], C [auth B], D [auth C], F [auth D], G [auth E], H [auth F], J [auth G], K [auth H], L [auth I], N [auth J], O [auth K], P [auth L], R [auth M], S [auth N], T [auth O], V [auth P], W [auth Q], X [auth R]	IPR048779	Receptor binding protein, neck domain	Domain
B [auth A], C [auth B], D [auth C], F [auth D], G [auth E], B [auth A], C [auth B], D [auth C], F [auth D], G [auth E], H [auth F], J [auth G], K [auth H], L [auth I], N [auth J], O [auth K], P [auth L], R [auth M], S [auth N], T [auth O], V [auth P], W [auth Q], X [auth R]	IPR048780	Receptor-binding protein, N-terminal shoulder domain	Domain
B [auth A], C [auth B], D [auth C], F [auth D], G [auth E], B [auth A], C [auth B], D [auth C], F [auth D], G [auth E], H [auth F], J [auth G], K [auth H], L [auth I], N [auth J], O [auth K], P [auth L], R [auth M], S [auth N], T [auth O], V [auth P], W [auth Q], X [auth R]	IPR008982	Adenovirus pIV-like, attachment domain	Homologous Superfamily
B [auth A], C [auth B], D [auth C], F [auth D], G [auth E], B [auth A], C [auth B], D [auth C], F [auth D], G [auth E], H [auth F], J [auth G], K [auth H], L [auth I], N [auth J], O [auth K], P [auth L], R [auth M], S [auth N], T [auth O], V [auth P], W [auth Q], X [auth R]	IPR015027	Receptor-binding protein of phage tail base-plate Siphoviridae, head	Domain
A [auth T], AA [auth 4], BA [auth 5], CA [auth 6], DA [auth 7], A [auth T], AA [auth 4], BA [auth 5], CA [auth 6], DA [auth 7], E [auth S], I [auth U], M [auth V], Q [auth W], U [auth X], Y [auth 2], Z [auth 3]	IPR048272	Distal tail protein, C-terminal domain	Domain
A [auth T], AA [auth 4], BA [auth 5], CA [auth 6], DA [auth 7], A [auth T], AA [auth 4], BA [auth 5], CA [auth 6], DA [auth 7], E [auth S], I [auth U], M [auth V], Q [auth W], U [auth X], Y [auth 2], Z [auth 3]	IPR031899	Distal tail protein, N-terminal domain	Domain

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

6ZJJ | pdb_00006zjj

Topological model of p2 virion baseplate in resting conformation

External Resource: Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Domain Annotation: ECOD Classification ECOD Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage