6ZGA
COPII on membranes, inner coat
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | C-terminal, gelsolin-like domain of Sec23/24 | 8036411 | 3000569 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | beta-sandwich domain of sec23/24 | 8036409 | 3001553 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Helical domain of Sec23/24 | 8036407 | 3001173 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | vWA-like | 8036410 | 3000832 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | beta-sandwich domain of sec23/24 | 8036409 | 3001553 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Zn-finger domain of Sec23/24 | 8036412 | 3000837 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | vWA-like | 8036410 | 3000832 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | beta-sandwich domain of sec23/24 | 8036409 | 3001553 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Helical domain of Sec23/24 | 8036407 | 3001173 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | C-terminal, gelsolin-like domain of Sec23/24 | 8036411 | 3000569 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | beta-sandwich domain of sec23/24 | 8036409 | 3001553 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Zn-finger domain of Sec23/24 | 8036412 | 3000837 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | beta-sandwich domain of sec23/24 | 8038531 | 3001553 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Zn-finger domain of Sec23/24 | 8038541 | 3000837 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | C-terminal, gelsolin-like domain of Sec23/24 | 8038535 | 3000569 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | beta-sandwich domain of sec23/24 | 8038531 | 3001553 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Helical domain of Sec23/24 | 8038525 | 3001173 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | vWA-like | 8038533 | 3000832 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | vWA-like | 8038533 | 3000832 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Zn-finger domain of Sec23/24 | 8038541 | 3000837 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | beta-sandwich domain of sec23/24 | 8038531 | 3001553 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | beta-sandwich domain of sec23/24 | 8038531 | 3001553 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | C-terminal, gelsolin-like domain of Sec23/24 | 8038535 | 3000569 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Helical domain of Sec23/24 | 8038525 | 3001173 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Ras-like P-loop GTPases | 8060249 | 3002022 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Ras-like P-loop GTPases | 8060249 | 3002022 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Sec23_BS | e6zgaA4 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Common fold of diphtheria toxin/transcription factors/cytochrome f | F: Sec23_BS | ECOD (1.6) |
A | Sec23_helical | e6zgaA2 | A: alpha arrays | X: ERP29 C domain-like | H: Helical domain of Sec23/24 (From Topology) | T: Helical domain of Sec23/24 | F: Sec23_helical | ECOD (1.6) |
A | Gelsolin | e6zgaA5 | A: a+b three layers | X: Gelsolin-like (From Topology) | H: Gelsolin-like (From Topology) | T: Gelsolin-like | F: Gelsolin | ECOD (1.6) |
A | Sec23_trunk | e6zgaA3 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: vWA-like | F: Sec23_trunk | ECOD (1.6) |
A | zf-Sec23_Sec24 | e6zgaA1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: zf-Sec23_Sec24 | ECOD (1.6) |
E | Sec23_BS | e6zgaE2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Common fold of diphtheria toxin/transcription factors/cytochrome f | F: Sec23_BS | ECOD (1.6) |
E | Sec23_helical | e6zgaE1 | A: alpha arrays | X: ERP29 C domain-like | H: Helical domain of Sec23/24 (From Topology) | T: Helical domain of Sec23/24 | F: Sec23_helical | ECOD (1.6) |
E | Gelsolin | e6zgaE4 | A: a+b three layers | X: Gelsolin-like (From Topology) | H: Gelsolin-like (From Topology) | T: Gelsolin-like | F: Gelsolin | ECOD (1.6) |
E | Sec23_trunk | e6zgaE3 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: vWA-like | F: Sec23_trunk | ECOD (1.6) |
E | zf-Sec23_Sec24 | e6zgaE5 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: zf-Sec23_Sec24 | ECOD (1.6) |
B | Sec23_BS | e6zgaB2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Common fold of diphtheria toxin/transcription factors/cytochrome f | F: Sec23_BS | ECOD (1.6) |
B | Sec23_helical | e6zgaB1 | A: alpha arrays | X: ERP29 C domain-like | H: Helical domain of Sec23/24 (From Topology) | T: Helical domain of Sec23/24 | F: Sec23_helical | ECOD (1.6) |
B | Gelsolin | e6zgaB5 | A: a+b three layers | X: Gelsolin-like (From Topology) | H: Gelsolin-like (From Topology) | T: Gelsolin-like | F: Gelsolin | ECOD (1.6) |
B | Sec23_trunk | e6zgaB3 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: vWA-like | F: Sec23_trunk | ECOD (1.6) |
B | zf-Sec23_Sec24 | e6zgaB4 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: zf-Sec23_Sec24 | ECOD (1.6) |
F | Sec23_BS | e6zgaF2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Common fold of diphtheria toxin/transcription factors/cytochrome f | F: Sec23_BS | ECOD (1.6) |
F | Sec23_helical | e6zgaF3 | A: alpha arrays | X: ERP29 C domain-like | H: Helical domain of Sec23/24 (From Topology) | T: Helical domain of Sec23/24 | F: Sec23_helical | ECOD (1.6) |
F | Gelsolin | e6zgaF5 | A: a+b three layers | X: Gelsolin-like (From Topology) | H: Gelsolin-like (From Topology) | T: Gelsolin-like | F: Gelsolin | ECOD (1.6) |
F | Sec23_trunk | e6zgaF1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: vWA-like | F: Sec23_trunk | ECOD (1.6) |
F | zf-Sec23_Sec24 | e6zgaF4 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: zf-Sec23_Sec24 | ECOD (1.6) |
C | Ras | e6zgaC1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Ras | ECOD (1.6) |
G | Ras | e6zgaG1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Ras | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF04815 | Sec23/Sec24 helical domain (Sec23_helical) | Sec23/Sec24 helical domain | COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and ... | Domain | |
PF00626 | Gelsolin repeat (Gelsolin) | Gelsolin repeat | - | Domain | |
PF08033 | Sec23/Sec24 beta-sandwich domain (Sec23_BS) | Sec23/Sec24 beta-sandwich domain | - | Domain | |
PF04811 | Sec23/Sec24 trunk domain (Sec23_trunk) | Sec23/Sec24 trunk domain | COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and ... | Domain | |
PF04810 | Sec23/Sec24 zinc finger (zf-Sec23_Sec24) | Sec23/Sec24 zinc finger | COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and ... | Domain | |
PF04815 | Sec23/Sec24 helical domain (Sec23_helical) | Sec23/Sec24 helical domain | COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and ... | Domain | |
PF00626 | Gelsolin repeat (Gelsolin) | Gelsolin repeat | - | Domain | |
PF08033 | Sec23/Sec24 beta-sandwich domain (Sec23_BS) | Sec23/Sec24 beta-sandwich domain | - | Domain | |
PF04811 | Sec23/Sec24 trunk domain (Sec23_trunk) | Sec23/Sec24 trunk domain | COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and ... | Domain | |
PF04810 | Sec23/Sec24 zinc finger (zf-Sec23_Sec24) | Sec23/Sec24 zinc finger | COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and ... | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
Chains | Resource Link | Group | Subgroup | Protein |
---|---|---|---|---|
mpstruc | MONOTOPIC MEMBRANE PROTEINS | Membrane-Shaping Proteins (monotopic) | coat protein complex II (COPII) on membranes, outer coat right-handed rod, class1 |