6Z6V
Globular head of C1q in complex with the nanobody C1qNb75
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- IMGT Antibody Annotation
- SAbDab Antibody Annotation
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Pharos: Disease Associations
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B | SCOP2B Superfamily | TNF-like | 8038832 | 3000061 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | TNF-like | 8038832 | 3000061 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | TNF-like | 8038828 | 3000061 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | TNF-like | 8038828 | 3000061 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | TNF-like | 8038834 | 3000061 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | TNF-like | 8038834 | 3000061 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | C1q | e6z6vB1 | A: beta sandwiches | X: jelly-roll | H: TNF-like (From Topology) | T: TNF-like | F: C1q | ECOD (1.6) |
E | C1q | e6z6vE1 | A: beta sandwiches | X: jelly-roll | H: TNF-like (From Topology) | T: TNF-like | F: C1q | ECOD (1.6) |
A | C1q | e6z6vA1 | A: beta sandwiches | X: jelly-roll | H: TNF-like (From Topology) | T: TNF-like | F: C1q | ECOD (1.6) |
D | C1q | e6z6vD1 | A: beta sandwiches | X: jelly-roll | H: TNF-like (From Topology) | T: TNF-like | F: C1q | ECOD (1.6) |
C | C1q | e6z6vC1 | A: beta sandwiches | X: jelly-roll | H: TNF-like (From Topology) | T: TNF-like | F: C1q | ECOD (1.6) |
F | C1q | e6z6vF1 | A: beta sandwiches | X: jelly-roll | H: TNF-like (From Topology) | T: TNF-like | F: C1q | ECOD (1.6) |
H | V-set_8 | e6z6vH1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
G | V-set_12 | e6z6vG1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_12 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B | 2.60.120.40 | Mainly Beta | Sandwich | Jelly Rolls | CATH (utative) | |
E | 2.60.120.40 | Mainly Beta | Sandwich | Jelly Rolls | CATH (utative) | |
A | 2.60.120.40 | Mainly Beta | Sandwich | Jelly Rolls | CATH (utative) | |
D | 2.60.120.40 | Mainly Beta | Sandwich | Jelly Rolls | CATH (utative) | |
C | 2.60.120.40 | Mainly Beta | Sandwich | Jelly Rolls | CATH (utative) | |
F | 2.60.120.40 | Mainly Beta | Sandwich | Jelly Rolls | CATH (utative) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
nAb C1qNb75 | VH | Lama glama (llama) | IGHV3-3*01, IGHJ4*01 | V-DOMAIN VH | IG | VH | IMGT (202432-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
Heavy Chain | IGHV1 | - | complement c1q subcomponent subunit b | complement c1q subcomponent subunit c | SAbDab (2024-08-16) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00386 | C1q domain (C1q) | C1q domain | C1q is a subunit of the C1 enzyme complex that activates the serum complement system. | Domain | |
PF00386 | C1q domain (C1q) | C1q domain | C1q is a subunit of the C1 enzyme complex that activates the serum complement system. | Domain | |
PF00386 | C1q domain (C1q) | C1q domain | C1q is a subunit of the C1 enzyme complex that activates the serum complement system. | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR008160 | Collagen triple helix repeat | Repeat | |
IPR008983 | Tumour necrosis factor-like domain superfamily | Homologous Superfamily | |
IPR001073 | C1q domain | Domain | |
IPR050392 | Collagen/C1q domain-containing | Family | |
IPR008160 | Collagen triple helix repeat | Repeat | |
IPR008983 | Tumour necrosis factor-like domain superfamily | Homologous Superfamily | |
IPR001073 | C1q domain | Domain | |
IPR050392 | Collagen/C1q domain-containing | Family | |
IPR008160 | Collagen triple helix repeat | Repeat | |
IPR008983 | Tumour necrosis factor-like domain superfamily | Homologous Superfamily | |
IPR001073 | C1q domain | Domain | |
IPR050392 | Collagen/C1q domain-containing | Family |