Annotations: 6YYJ

Crystal structure of native Phycocyanin from T. elongatus in spacegroup P21212 at 2.1 Angstroms

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d6yyjb_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	Phycocyanin beta subunit	(Thermosynechococcus vestitus ) [TaxId: 146786 ],	SCOPe (2.08)
F	d6yyjf_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	Phycocyanin beta subunit	(Thermosynechococcus vestitus ) [TaxId: 146786 ],	SCOPe (2.08)
D	d6yyjd_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	Phycocyanin beta subunit	(Thermosynechococcus vestitus ) [TaxId: 146786 ],	SCOPe (2.08)
A	d6yyja_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	Phycocyanin alpha subunit	(Thermosynechococcus vestitus ) [TaxId: 146786 ],	SCOPe (2.08)
C	d6yyjc_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	Phycocyanin alpha subunit	(Thermosynechococcus vestitus ) [TaxId: 146786 ],	SCOPe (2.08)
E	d6yyje_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	Phycocyanin alpha subunit	(Thermosynechococcus vestitus ) [TaxId: 146786 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Globin-like	8032280	3000554	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Globin-like	8032280	3000554	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Globin-like	8032280	3000554	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Globin-like	8032279	3000554	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Globin-like	8032279	3000554	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Globin-like	8032279	3000554	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	WD40	e6yyjB1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: WD40	ECOD (v294.2)
F	WD40	e6yyjF1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: WD40	ECOD (v294.2)
D	WD40	e6yyjD1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: WD40	ECOD (v294.2)
A	WD40	e6yyjA1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: WD40	ECOD (v294.2)
C	WD40	e6yyjC1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: WD40	ECOD (v294.2)
E	WD40	e6yyjE1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: WD40	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B, D, F	PF00502	Phycobilisome protein (Phycobilisome)	Phycobilisome protein		Domain
A, C, E	PF00502	Phycobilisome protein (Phycobilisome)	Phycobilisome protein		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B, D, F	C-phycocyanin beta chain	-	photosynthesis metabolic process cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex membrane protein complex light-harvesting complex phycobilisome
A, C, E	C-phycocyanin alpha chain	-	photosynthesis metabolic process cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex membrane protein complex light-harvesting complex phycobilisome

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, D, F	IPR038719	Phycobilisome, alpha/beta subunit superfamily	Homologous Superfamily
B, D, F	IPR006247	Phycocyanin, beta subunit	Family
B, D, F	IPR009050	Globin-like superfamily	Homologous Superfamily
B, D, F	IPR012128	Phycobilisome, alpha/beta subunit	Family
A, C, E	IPR038719	Phycobilisome, alpha/beta subunit superfamily	Homologous Superfamily
A, C, E	IPR006246	Phycocyanin, alpha subunit	Family
A, C, E	IPR009050	Globin-like superfamily	Homologous Superfamily
A, C, E	IPR012128	Phycobilisome, alpha/beta subunit	Family

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
B, D, F	MEN	Parent Component: ASN : AA0070 : N4-methyl-L-asparagine MOD:00079

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