6YX1
Crystal structure of SHANK1 PDZ in complex with a peptide-small molecule hybrid
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d6yx1a1 | All beta proteins | PDZ domain-like | PDZ domain-like | PDZ domain | Shank1, PDZ domain | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
A | d6yx1a2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B | d6yx1b1 | All beta proteins | PDZ domain-like | PDZ domain-like | PDZ domain | Shank1, PDZ domain | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B | d6yx1b2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PDZ | e6yx1A1 | A: beta barrels | X: PDZ domain (From Topology) | H: PDZ domain (From Topology) | T: PDZ domain | F: PDZ | ECOD (1.6) |
B | PDZ | e6yx1B1 | A: beta barrels | X: PDZ domain (From Topology) | H: PDZ domain (From Topology) | T: PDZ domain | F: PDZ | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF17820 | PDZ domain (PDZ_6) | PDZ domain | This entry represents the PDZ domain from a wide variety of proteins. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR036770 | Ankyrin repeat-containing domain superfamily | Homologous Superfamily | |
IPR036028 | SH3-like domain superfamily | Homologous Superfamily | |
IPR002110 | Ankyrin repeat | Repeat | |
IPR013761 | Sterile alpha motif/pointed domain superfamily | Homologous Superfamily | |
IPR041489 | PDZ domain 6 | Domain | |
IPR036034 | PDZ superfamily | Homologous Superfamily | |
IPR001452 | SH3 domain | Domain | |
IPR051569 | SH3 and multiple ankyrin repeat domains protein | Family | |
IPR001478 | PDZ domain | Domain | |
IPR001660 | Sterile alpha motif domain | Domain |