6YWZ
Crystal structure of SHANK1 PDZ in complex with a peptide-small molecule hybrid
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | d6ywzb1 | All beta proteins | PDZ domain-like | PDZ domain-like | PDZ domain | Shank1, PDZ domain | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
A [auth B] | d6ywzb2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B [auth A] | d6ywza1 | All beta proteins | PDZ domain-like | PDZ domain-like | PDZ domain | Shank1, PDZ domain | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B [auth A] | d6ywza2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | PDZ | e6ywzB1 | A: beta barrels | X: PDZ domain (From Topology) | H: PDZ domain (From Topology) | T: PDZ domain | F: PDZ | ECOD (1.6) |
B [auth A] | PDZ | e6ywzA1 | A: beta barrels | X: PDZ domain (From Topology) | H: PDZ domain (From Topology) | T: PDZ domain | F: PDZ | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth B], B [auth A] | PF17820 | PDZ domain (PDZ_6) | PDZ domain | This entry represents the PDZ domain from a wide variety of proteins. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth B], B [auth A] | IPR036770 | Ankyrin repeat-containing domain superfamily | Homologous Superfamily |
A [auth B], B [auth A] | IPR036028 | SH3-like domain superfamily | Homologous Superfamily |
A [auth B], B [auth A] | IPR002110 | Ankyrin repeat | Repeat |
A [auth B], B [auth A] | IPR013761 | Sterile alpha motif/pointed domain superfamily | Homologous Superfamily |
A [auth B], B [auth A] | IPR041489 | PDZ domain 6 | Domain |
A [auth B], B [auth A] | IPR036034 | PDZ superfamily | Homologous Superfamily |
A [auth B], B [auth A] | IPR001452 | SH3 domain | Domain |
A [auth B], B [auth A] | IPR051569 | SH3 and multiple ankyrin repeat domains protein | Family |
A [auth B], B [auth A] | IPR001478 | PDZ domain | Domain |
A [auth B], B [auth A] | IPR001660 | Sterile alpha motif domain | Domain |