6YWE

The structure of the mitoribosome from Neurospora crassa in the P/E tRNA bound state


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
L [auth I]SCOP2 FamilyRibosomal protein L14 8101198 4001826 SCOP2 (2021-05-27)
L [auth I]SCOP2 Superfamily50S Ribosomal protein L14-like 8101199 3000433 SCOP2 (2021-05-27)
CA [auth 0]SCOP2B SuperfamilyRibosomal protein L36 8101685 3001346 SCOP2B (2021-05-27)
JB [auth PP]SCOP2 FamilyRibosomal protein S16 8101190 4001077 SCOP2 (2021-05-27)
JB [auth PP]SCOP2 SuperfamilyRibosomal protein S16 8101191 3000680 SCOP2 (2021-05-27)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
B [auth e]PF00687e6ywee2 A: a+b two layersX: a+b domain in Ribosomal protein L1 (From Topology)H: a+b domain in Ribosomal protein L1 (From Topology)T: a+b domain in Ribosomal protein L1F: PF00687ECOD (1.6)
B [auth e]PF00687e6ywee1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Rossmann-like domain in Ribosomal protein L1 (From Topology)T: Rossmann-like domain in Ribosomal protein L1F: PF00687ECOD (1.6)
C [auth B]PF00181e6yweB1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00181ECOD (1.6)
C [auth B]PF03947e6yweB2 A: beta barrelsX: SH3H: SH3T: SH3F: PF03947ECOD (1.6)
E [auth D]PF00573e6yweD1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: PF00573ECOD (1.6)
G [auth F]F_UNCLASSIFIEDe6yweF2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: F_UNCLASSIFIEDECOD (1.6)
G [auth F]PF00347e6yweF1 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: PF00347ECOD (1.6)
H [auth G]PF01281e6yweG1 A: a+b two layersX: L9 N-domain-likeH: L9 N-domain-like (From Topology)T: L9 N-domain-likeF: PF01281ECOD (1.6)
J [auth g]PF00298e6yweg1 A: alpha arraysX: HTHH: HTHT: Ribosomal protein L11, C-terminal domainF: PF00298ECOD (1.6)
J [auth g]PF03946e6yweg2 A: a+b two layersX: Ribosomal protein L11/L12e N-terminal domain-likeH: Ribosomal protein L11/L12e N-terminal domain (From Topology)T: Ribosomal protein L11/L12e N-terminal domainF: PF03946ECOD (1.6)
K [auth H]PF00572e6yweH1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: PF00572ECOD (1.6)
L [auth I]PF00238e6yweI1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF00238ECOD (1.6)
M [auth J]PF00828e6yweJ1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF00828ECOD (1.6)
N [auth K]PF00252e6yweK1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: PF00252ECOD (1.6)
Q [auth N]PF00829e6yweN1 A: beta barrelsX: Ribosomal protein L21p (From Topology)H: Ribosomal protein L21p (From Topology)T: Ribosomal protein L21pF: PF00829ECOD (1.6)
S [auth P]PF00276e6yweP1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00276ECOD (1.6)
X [auth U]PF00327e6yweU1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: PF00327ECOD (1.6)
Z [auth W]PF01783e6yweW1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01783ECOD (1.6)
AA [auth X]PF00471e6yweX1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF00471ECOD (1.6)
BA [auth Y]PF00468e6yweY1 A: extended segmentsX: 50S ribosomal protein L34 (From Topology)H: 50S ribosomal protein L34 (From Topology)T: 50S ribosomal protein L34F: PF00468ECOD (1.6)
CA [auth 0]PF00444e6ywe01 A: few secondary structure elementsX: Ribosomal protein L36 (From Topology)H: Ribosomal protein L36 (From Topology)T: Ribosomal protein L36F: PF00444ECOD (1.6)
EA [auth 2]F_UNCLASSIFIEDe6ywe21 A: extended segmentsX: Mitochondrial 54S ribosomal protein L28 (From Topology)H: Mitochondrial 54S ribosomal protein L28 (From Topology)T: Mitochondrial 54S ribosomal protein L28F: F_UNCLASSIFIEDECOD (1.6)
FA [auth 3]PF09809e6ywe31 A: extended segmentsX: Mitochondrial 54S ribosomal protein L27 (From Topology)H: Mitochondrial 54S ribosomal protein L27 (From Topology)T: Mitochondrial 54S ribosomal protein L27F: PF09809ECOD (1.6)
GA [auth 4]PF05047e6ywe41 A: a+b three layersX: Thioredoxin-likeH: Thioredoxin-like (From Topology)T: Thioredoxin-likeF: PF05047ECOD (1.6)
IA [auth 6]PF00293,PF11788e6ywe61 A: a+b two layersX: beta-GraspH: Nudix (From Topology)T: NudixF: PF00293,PF11788ECOD (1.6)
JA [auth 7]PF05046e6ywe71 A: a+b two layersX: Glucose permease domain IIB-likeH: eIF1-like (From Topology)T: eIF1-likeF: PF05046ECOD (1.6)
LA [auth h]PF10780e6yweh1 A: a+b three layersX: Thioredoxin-likeH: Thioredoxin-like (From Topology)T: Thioredoxin-likeF: PF10780ECOD (1.6)
NA [auth 9]PF14622e6ywe91 A: alpha arraysX: RNase III catalytic domain-like (From Topology)H: RNase III catalytic domain-like (From Topology)T: RNase III catalytic domain-likeF: PF14622ECOD (1.6)
OA [auth a]PF12824e6ywea1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: PF12824ECOD (1.6)
PA [auth b]PF18126e6yweb1 A: extended segmentsX: Mitochondrial 54S ribosomal protein L25 (From Topology)H: Mitochondrial 54S ribosomal protein L25 (From Topology)T: Mitochondrial 54S ribosomal protein L25F: PF18126ECOD (1.6)
QA [auth c]PF09784e6ywec1 A: extended segmentsX: Mitochondrial 54S ribosomal protein L31 (From Topology)H: Mitochondrial 54S ribosomal protein L31 (From Topology)T: Mitochondrial 54S ribosomal protein L31F: PF09784ECOD (1.6)
RA [auth d]PF12829e6ywed1 A: a+b three layersX: Mitochondrial homologous recombination protein 1 (From Topology)H: Mitochondrial homologous recombination protein 1 (From Topology)T: Mitochondrial homologous recombination protein 1F: PF12829ECOD (1.6)
ZA [auth FF]PF01250e6yweFF1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S6 (From Topology)T: Ribosomal protein S6F: PF01250ECOD (1.6)
BB [auth HH]F_UNCLASSIFIEDe6yweHH2 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: F_UNCLASSIFIEDECOD (1.6)
BB [auth HH]PF00410e6yweHH1 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: PF00410ECOD (1.6)
DB [auth JJ]PF00338e6yweJJ1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: PF00338ECOD (1.6)
EB [auth KK]PF00411e6yweKK1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF00411ECOD (1.6)
FB [auth LL]PF00164e6yweLL1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00164ECOD (1.6)
GB [auth MM]PF00416e6yweMM1 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: PF00416ECOD (1.6)
HB [auth NN]PF00253e6yweNN1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: PF00253ECOD (1.6)
JB [auth PP]PF00886e6ywePP1 A: a+b two layersX: Ribosomal protein S16 (From Topology)H: Ribosomal protein S16 (From Topology)T: Ribosomal protein S16F: PF00886ECOD (1.6)
MB [auth SS]PF00203e6yweSS1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: PF00203ECOD (1.6)
NB [auth TT]PF01165e6yweTT1 A: extended segmentsX: 30S ribosomal protein S21 (From Topology)H: 30S ribosomal protein S21 (From Topology)T: 30S ribosomal protein S21F: PF01165ECOD (1.6)
SB [auth YY]PF08293e6yweYY1 A: extended segmentsX: Mitoribosomal protein mS33 (From Topology)H: Mitoribosomal protein mS33 (From Topology)T: Mitoribosomal protein mS33F: PF08293ECOD (1.6)
UB [auth 11]F_UNCLASSIFIEDe6ywe111 A: few secondary structure elementsX: p8-MTCP1-related (From Topology)H: p8-MTCP1-related (From Topology)T: p8-MTCP1-relatedF: F_UNCLASSIFIEDECOD (1.6)
XB [auth 44]F_UNCLASSIFIEDe6ywe441 A: alpha bundlesX: Long alpha-hairpinH: Fe,Mn superoxide dismutase (SOD), N-terminal domain (From Topology)T: Fe,Mn superoxide dismutase (SOD), N-terminal domainF: F_UNCLASSIFIEDECOD (1.6)
XB [auth 44]PF02777e6ywe442 A: a+b three layersX: Fe,Mn superoxide dismutase (SOD)-C (From Topology)H: Fe,Mn superoxide dismutase (SOD)-C (From Topology)T: Fe,Mn superoxide dismutase (SOD)-CF: PF02777ECOD (1.6)
YB [auth 55]F_UNCLASSIFIEDe6ywe551 A: alpha bundlesX: Long alpha-hairpinH: Fe,Mn superoxide dismutase (SOD), N-terminal domain (From Topology)T: Fe,Mn superoxide dismutase (SOD), N-terminal domainF: F_UNCLASSIFIEDECOD (1.6)
YB [auth 55]PF02777e6ywe552 A: a+b three layersX: Fe,Mn superoxide dismutase (SOD)-C (From Topology)H: Fe,Mn superoxide dismutase (SOD)-C (From Topology)T: Fe,Mn superoxide dismutase (SOD)-CF: PF02777ECOD (1.6)
BC [auth 88]PF16113e6ywe881 A: a/b three-layered sandwichesX: ClpP/crotonase (From Topology)H: ClpP/crotonase (From Topology)T: ClpP/crotonaseF: PF16113ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
D [auth C]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
E [auth D]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
F [auth E]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
K [auth H]PF1078039S ribosomal protein L53/MRP-L53 (MRP_L53)39S ribosomal protein L53/MRP-L53- Family
M [auth J]PF05047Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain (L51_S25_CI-B8)Mitochondrial ribosomal protein L51 / S25 / CI-B8 domainThe proteins in this family are located in the mitochondrion. The family includes ribosomal protein L51, and S25. This family also includes mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) EC:1.6.5.3. It is not known whether all member ...The proteins in this family are located in the mitochondrion. The family includes ribosomal protein L51, and S25. This family also includes mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) EC:1.6.5.3. It is not known whether all members of this family form part of the NADH-ubiquinone oxidoreductase and whether they are also all ribosomal proteins. Structurally related to thioredoxin-fold.
Domain
N [auth K]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Domain
Q [auth N]PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
R [auth O]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
X [auth U]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
Y [auth V]PF21492Ribosomal protein L31p, N-terminal (bL31_N)Ribosomal protein L31p, N-terminalRibosomal protein L31p (bL31, also known as 54S ribosomal protein L36), is a component of the mitochondrial ribosome. Overexpression of bL31m suppresses mutations in the COX2 leader peptide-encoding and initiation codon regions [1,2]. This entry repr ...Ribosomal protein L31p (bL31, also known as 54S ribosomal protein L36), is a component of the mitochondrial ribosome. Overexpression of bL31m suppresses mutations in the COX2 leader peptide-encoding and initiation codon regions [1,2]. This entry represents the N-terminal domain of yeast bL31 [3].
Domain
Z [auth W]PF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family
BA [auth Y]PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
CA [auth 0]PF00444Ribosomal protein L36 (Ribosomal_L36)Ribosomal protein L36- Domain
JA [auth 7]PF05046Mitochondrial large subunit ribosomal protein (Img2) (Img2)Mitochondrial large subunit ribosomal protein (Img2)This family of proteins have been identified as part of the mitochondrial large ribosomal subunit in yeast [1].Domain
KA [auth 8]PF10501Ribosomal subunit 39S (Ribosomal_L50)Ribosomal subunit 39SThe 39S ribosomal protein appears to be a subunit of one of the larger mitochondrial 66S or 70S units [1]. Under conditions of ethanol-stress in rats the larger subunit is largely dissociated into its smaller components [2]. In E. coli, in the absenc ...The 39S ribosomal protein appears to be a subunit of one of the larger mitochondrial 66S or 70S units [1]. Under conditions of ethanol-stress in rats the larger subunit is largely dissociated into its smaller components [2]. In E. coli, in the absence of the enzyme pseudouridine synthase (RluD) synthase, there is an accumulation of 50S and 30S subunits and the appearance of abnormal particles (62S and 39S), with concomitant loss of 70S ribosomes [2].
Domain
VA [auth BB]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
YA [auth EE]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domain- Domain
YA [auth EE]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domain- Domain
GB [auth MM]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
IB [auth OO]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
LB [auth RR]PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
OB [auth UU]PF13741Mitochondrial ribosomal protein S25 (MRP-S25)Mitochondrial ribosomal protein S25- Family
RB [auth XX]PF10236Mitochondrial ribosomal death-associated protein 3 (DAP3)Mitochondrial ribosomal death-associated protein 3- Family
TB [auth ZZ]PF10213Mitochondrial ribosomal subunit protein (MRP-S28)Mitochondrial ribosomal subunit protein- Family
WB [auth 33]PF09597IGR protein motif (IGR)IGR protein motifThis domain is found in fungal proteins and contains a conserved IGR motif. Its function is unknown.Domain
ZB [auth 66]PF12298Eukaryotic mitochondrial regulator protein (Bot1p)Eukaryotic mitochondrial regulator protein- Family
BC [auth 88]PF16113Enoyl-CoA hydratase/isomerase (ECH_2)Enoyl-CoA hydratase/isomeraseThis family contains a diverse set of enzymes including: enoyl-CoA hydratase, napthoate synthase, carnitate racemase, 3-hydroxybutyryl-CoA dehydratase and dodecanoyl-CoA delta-isomerase. This family differs from Pfam:PF00378 in the structure of it's ...This family contains a diverse set of enzymes including: enoyl-CoA hydratase, napthoate synthase, carnitate racemase, 3-hydroxybutyryl-CoA dehydratase and dodecanoyl-CoA delta-isomerase. This family differs from Pfam:PF00378 in the structure of it's C-terminus.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
23S rRNA---
B [auth e]60S ribosomal protein L1, mitochondrial -
C [auth B]60S ribosomal protein L2, mitochondrial---
D [auth C]Related to ribosomal protein L3, mitochondrial
E [auth D]60S ribosomal protein L4, variant
F [auth E]Related to ribosomal protein L5, mitochondrial
G [auth F]uL6m---
H [auth G]RIBOSOMAL_L9 domain-containing protein---
I [auth f]Related to ribosomal protein YmL11, mitochondrial
J [auth g]uL11m---
K [auth H]uL13m---
L [auth I]Ribosomal protein L14---
M [auth J]Ribosomal protein L15---
N [auth K]Related to ribosomal protein L16, mitochondrial
O [auth L]uL17m---
P [auth M]bL19m---
Q [auth N]Related to ribosomal protein YmL49, mitochondrial -
R [auth O]Mitochondrial large ribosomal subunit
S [auth P]uL23m---
T [auth Q]KOW domain-containing protein---
U [auth R]Related to 60s ribosomal protein L2 (Mitochondrial)
V [auth S]bL28m---
W [auth T]54S ribosomal protein L4, mitochondrial---
X [auth U]Related to ribosomal protein L30
Y [auth V]Related to ribosomal protein YmL36, mitochondrial
Z [auth W]Related to ribosomal protein YmL32 (Mitochondrial),Mitochondrial ribosomal protein subunit L32
AA [auth X]bL33m---
BA [auth Y]Related to ribosomal protein L34, mitochondrial
CA [auth 0]Ribosomal protein
DA [auth 1]PEBP-like protein---
EA [auth 2]mL40---
FA [auth 3]mL41---
GA [auth 4]L51_S25_CI-B8 domain-containing protein---
HA [auth 5]Ribonuclease III---
IA [auth 6]MRP-L46 domain-containing protein---
JA [auth 7]mL49
KA [auth 8]mL50- -
LA [auth h]Probable ribosomal protein YmL44, mitochondrial -
MA [auth i]mL54---
NA [auth 9]RNase III domain-containing protein---
OA [auth a]Related to ribosomal protein YmL20, mitochondrial -
PA [auth b]Mitoc_mL59 domain-containing protein---
QA [auth c]54S ribosomal protein L31, mitochondrial---
RA [auth d]mL67---
SA [auth j]L51_S25_CI-B8 domain-containing protein -
TA [auth bb]tRNA P/E state---
UA [auth AA]bS1m---
VA [auth BB]Mito ribosomal protein S2
WA [auth CC]Ribosomal protein S5- -
XA [auth DD]S4 RNA-binding domain-containing protein---
YA [auth EE]Related to ribosomal protein S5 (Mitochondrial)
ZA [auth FF]Ribosomal protein S6---
AB [auth GG]Ribosomal_S7 domain-containing protein---
BB [auth HH]uS8m---
CB [auth II]uS9m---
DB [auth JJ]30S ribosomal protein S10, mitochondrial---
EB [auth KK]Translational machinery component---
FB [auth LL]Ribosomal protein S12---
GB [auth MM]Probable ribosomal protein S13
HB [auth NN]Mitochondrial 37S ribosomal protein MRP2---
IB [auth OO]Related to ribosomal protein S15 (Mitochondrial)
JB [auth PP]bS16m---
KB [auth QQ]uS17m---
LB [auth RR]Ribosomal protein S18
MB [auth SS]Ribosomal protein S19/S15---
NB [auth TT]bS21m---
OB [auth UU]37S ribosomal protein S25, mitochondrial -
PB [auth VV]mS26- -
QB [auth WW]mS27- -
RB [auth XX]Mitochondrial ribosomal protein DAP3
SB [auth YY]mS33---
TB [auth ZZ]37S ribosomal protein S24, mitochondrial
UB [auth 11]37S ribosomal protein mrp10, mitochondrial---
VB [auth 22]DUF1713 domain-containing protein- -
WB [auth 33]Protein FYV4, mitochondrial- -
XB [auth 44],
YB [auth 55]
Manganese and iron superoxide dismutase---
ZB [auth 66]mS45
AC [auth 77]mS46---
BC [auth 88]3-hydroxyisobutyryl-CoA hydrolase, mitochondrial
CC [auth 00],
DC [auth 99]
IF1---
EC [auth aa]16S rRNA---
FC [auth ee]mRNA---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
B [auth e]IPR016095Large ribosomal subunit protein uL1, 3-layer alpha/beta-sandwich domainHomologous Superfamily
B [auth e]IPR023674Ribosomal protein uL1-likeHomologous Superfamily
B [auth e]IPR028364Ribosomal protein uL1/ribosomal biogenesis proteinFamily
D [auth C]IPR019927Large ribosomal subunit protein uL3, bacterial/organelle-typeFamily
D [auth C]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
D [auth C]IPR000597Large ribosomal subunit protein uL3Family
E [auth D]IPR013005Large ribosomal subunit protein uL4-likeFamily
E [auth D]IPR002136Large ribosomal subunit protein uL4Family
E [auth D]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
F [auth E]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
F [auth E]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
F [auth E]IPR002132Large ribosomal subunit protein uL5Family
I [auth f]IPR043141Large ribosomal subunit protein uL10-like domain superfamilyHomologous Superfamily
I [auth f]IPR047865Large ribosomal subunit protein uL10, bacterial typeFamily
N [auth K]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
N [auth K]IPR020798Large ribosomal subunit protein uL16, conserved siteConserved Site
N [auth K]IPR000114Large ribosomal subunit protein uL16, bacterial-typeFamily
N [auth K]IPR016180Large ribosomal subunit protein uL16 domainDomain
N [auth K]IPR047873Large ribosomal subunit protein uL16Family
Q [auth N]IPR028909Large ribosomal subunit protein bL21-likeFamily
Q [auth N]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
R [auth O]IPR047867Large ribosomal subunit protein uL22, bacterial/organelle-typeFamily
R [auth O]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
R [auth O]IPR001063Large ribosomal subunit protein uL22Family
U [auth R]IPR001684Large ribosomal subunit protein bL27Family
X [auth U]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
X [auth U]IPR005996Large ribosomal subunit protein uL30, bacterial-typeFamily
X [auth U]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
X [auth U]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
Y [auth V]IPR034600Large ribosomal subunit protein bL31mFamily
Y [auth V]IPR048874Ribosomal protein bL31m, N-terminal domainDomain
Z [auth W]IPR002677Large ribosomal subunit protein bL32Family
Z [auth W]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
BA [auth Y]IPR000271Large ribosomal subunit protein bL34Family
CA [auth 0]IPR000473Large ribosomal subunit protein bL36Family
CA [auth 0]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
JA [auth 7]IPR007740Large ribosomal subunit protein mL49Family
KA [auth 8]IPR018305Large ribosomal subunit protein mL50Family
LA [auth h]IPR019716Large ribosomal subunit protein mL53Family
LA [auth h]IPR042776Large ribosomal subunit protein mL53, fungiFamily
OA [auth a]IPR024388Large ribosomal subunit protein mL58Family
SA [auth j]IPR007741Ribosomal protein/NADH dehydrogenase domainDomain
SA [auth j]IPR036249Thioredoxin-like superfamilyHomologous Superfamily
SA [auth j]IPR040049Ribosomal subunit protein mS25/mL61, mitochondrialFamily
VA [auth BB]IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
VA [auth BB]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
VA [auth BB]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
VA [auth BB]IPR001865Small ribosomal subunit protein uS2Family
YA [auth EE]IPR000851Small ribosomal subunit protein uS5Family
YA [auth EE]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
YA [auth EE]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
YA [auth EE]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
YA [auth EE]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
GB [auth MM]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
GB [auth MM]IPR001892Small ribosomal subunit protein uS13Family
GB [auth MM]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
GB [auth MM]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
IB [auth OO]IPR005290Small ribosomal subunit protein uS15, bacterial-typeFamily
IB [auth OO]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
IB [auth OO]IPR000589Small ribosomal subunit protein uS15Family
LB [auth RR]IPR001648Small ribosomal subunit protein bS18Family
LB [auth RR]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
OB [auth UU]IPR016939Small ribosomal subunit protein mS23, fungiFamily
RB [auth XX]IPR017082Small ribosomal subunit protein mS29, fungalFamily
RB [auth XX]IPR019368Small ribosomal subunit protein mS29Family
TB [auth ZZ]IPR017081Small ribosomal subunit protein mS35Family
TB [auth ZZ]IPR039848Small ribosomal subunit protein mS35, mitochondrialFamily
TB [auth ZZ]IPR019349Small ribosomal subunit protein mS35, mitochondrial, conserved domainDomain
VB [auth 22]IPR013177Ribosomal protein mS38, C-terminalDomain
WB [auth 33]IPR013761Sterile alpha motif/pointed domain superfamilyHomologous Superfamily
WB [auth 33]IPR039603Small ribosomal subunit protein mS41Family
WB [auth 33]IPR019083IGR domainDomain
ZB [auth 66]IPR021036Small ribosomal subunit protein mS45Family
BC [auth 88]IPR029045ClpP/crotonase-like domain superfamilyHomologous Superfamily
BC [auth 88]IPR032259Enoyl-CoA hydratase/isomerase, HIBYL-CoA-H typeFamily
BC [auth 88]IPR045004Enoyl-CoA hydratase/isomerase domainDomain
BC [auth 88]IPR018376Enoyl-CoA hydratase/isomerase, conserved siteConserved Site