6YS5

Acinetobacter baumannii ribosome-amikacin complex - 30S subunit head

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
J [auth t]	SCOP2 Family	Ribosomal protein S19	8097495	4001081	SCOP2 (2022-06-29)
J [auth t]	SCOP2 Superfamily	Ribosomal protein S19	8097496	3000686	SCOP2 (2022-06-29)
E [auth h]	SCOP2 Family	Ribosomal protein S7	8097465	4001112	SCOP2 (2022-06-29)
E [auth h]	SCOP2 Superfamily	Ribosomal protein S7	8097466	3000799	SCOP2 (2022-06-29)
F [auth j]	SCOP2B Superfamily	Ribosomal protein S5 domain 2-like	8097538	3000100	SCOP2B (2022-06-29)
G [auth k]	SCOP2B Superfamily	Ribosomal protein S10	8097488	3001336	SCOP2B (2022-06-29)
H [auth n]	SCOP2B Superfamily	S13-like H2TH domain	8097524	3000053	SCOP2B (2022-06-29)
I [auth o]	SCOP2B Superfamily	Glucocorticoid receptor-like (DNA-binding domain)	8097512	3000068	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
J [auth t]	Ribosomal_S19	e6ys5t1	A: a+b two layers	X: Ribosomal protein S19 (From Topology)	H: Ribosomal protein S19 (From Topology)	T: Ribosomal protein S19	F: Ribosomal_S19	ECOD (1.6)
D [auth d]	Ribosomal_S3_C	e6ys5d1	A: a+b two layers	X: T-fold	H: Ribosomal protein S3-C (From Topology)	T: Ribosomal protein S3-C	F: Ribosomal_S3_C	ECOD (1.6)
D [auth d]	KH_2_1	e6ys5d2	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: KH-domains	T: Prokaryotic type KH domain (KH-domain type II)	F: KH_2_1	ECOD (1.6)
E [auth h]	Ribosomal_S7_1	e6ys5h1	A: alpha arrays	X: Ribosomal protein S7 (From Topology)	H: Ribosomal protein S7 (From Topology)	T: Ribosomal protein S7	F: Ribosomal_S7_1	ECOD (1.6)
F [auth j]	Ribosomal_S9	e6ys5j1	A: a+b two layers	X: Ribosomal protein S5 domain 2-like (From Topology)	H: Ribosomal protein S5 domain 2-like (From Topology)	T: Ribosomal protein S5 domain 2-like	F: Ribosomal_S9	ECOD (1.6)
G [auth k]	Ribosomal_S10	e6ys5k1	A: a+b two layers	X: Alpha-beta plaits	H: Ribosomal protein S10 (From Topology)	T: Ribosomal protein S10	F: Ribosomal_S10	ECOD (1.6)
H [auth n]	Ribosomal_S13_1	e6ys5n1	A: alpha arrays	X: HhH/H2TH	H: H2TH (From Topology)	T: H2TH	F: Ribosomal_S13_1	ECOD (1.6)
I [auth o]	Ribosomal_S14_1	e6ys5o1	A: few secondary structure elements	X: Glucocorticoid receptor-like	H: LIM domain-like	T: LIM domain-like	F: Ribosomal_S14_1	ECOD (1.6)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth 3]	16S ribosomal RNA	-	-	-
J [auth t]	30S ribosomal protein S19	structural molecule activity structural constituent of ribosome RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding	ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization non-membrane-bounded organelle assembly ribosomal small subunit assembly protein-RNA complex assembly ribosomal small subunit biogenesis cellular component organization cellular component biogenesis ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly protein-containing complex assembly ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization non-membrane-bounded organelle assembly ribosomal small subunit assembly protein-RNA complex assembly ribosomal small subunit biogenesis cellular component organization cellular component biogenesis ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly protein-containing complex assembly cellular process cellular component organization or biogenesis ribosome assembly cellular biosynthetic process cellular metabolic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process protein metabolic process macromolecule metabolic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit cellular anatomical entity intracellular organelle ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit cellular anatomical entity intracellular organelle ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol non-membrane-bounded organelle
B [auth 7]	E-site tRNA	-	-	-
C [auth 9]	mRNA	-	-	-
D [auth d]	30S ribosomal protein S3	RNA binding binding organic cyclic compound binding nucleic acid binding mRNA binding rRNA binding structural molecule activity structural constituent of ribosome	cellular biosynthetic process cellular metabolic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit cellular anatomical entity intracellular organelle ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit cellular anatomical entity intracellular organelle ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol non-membrane-bounded organelle
E [auth h]	30S ribosomal protein S7	RNA binding binding organic cyclic compound binding nucleic acid binding mRNA binding tRNA binding structural molecule activity structural constituent of ribosome rRNA binding	ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization non-membrane-bounded organelle assembly ribosomal small subunit assembly protein-RNA complex assembly ribosomal small subunit biogenesis cellular component organization cellular component biogenesis ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly protein-containing complex assembly ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization non-membrane-bounded organelle assembly ribosomal small subunit assembly protein-RNA complex assembly ribosomal small subunit biogenesis cellular component organization cellular component biogenesis ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly protein-containing complex assembly cellular process cellular component organization or biogenesis ribosome assembly cellular biosynthetic process cellular metabolic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process protein metabolic process macromolecule metabolic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit cellular anatomical entity intracellular organelle ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit cellular anatomical entity intracellular organelle ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol non-membrane-bounded organelle
F [auth j]	30S ribosomal protein S9	RNA binding binding organic cyclic compound binding nucleic acid binding structural molecule activity structural constituent of ribosome	cellular biosynthetic process cellular metabolic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex intracellular anatomical structure small ribosomal subunit cellular anatomical entity ribosomal subunit intracellular organelle organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome non-membrane-bounded organelle
G [auth k]	30S ribosomal protein S10	RNA binding binding organic cyclic compound binding tRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome	cellular biosynthetic process cellular metabolic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex intracellular anatomical structure small ribosomal subunit cellular anatomical entity ribosomal subunit intracellular organelle organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome non-membrane-bounded organelle
H [auth n]	30S ribosomal protein S13	RNA binding binding organic cyclic compound binding tRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome rRNA binding	cellular biosynthetic process cellular metabolic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex ribonucleoprotein complex intracellular organelle intracellular anatomical structure organelle intracellular non-membrane-bounded organelle ribosome cellular anatomical entity non-membrane-bounded organelle
I [auth o]	30S ribosomal protein S14	structural molecule activity structural constituent of ribosome RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding	cellular biosynthetic process cellular metabolic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex intracellular anatomical structure small ribosomal subunit cellular anatomical entity ribosomal subunit intracellular organelle organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome non-membrane-bounded organelle cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
J [auth t]	IPR002222	Small ribosomal subunit protein uS19	Family
J [auth t]	IPR005732	Small ribosomal subunit protein uS19, bacterial-type	Family
J [auth t]	IPR023575	Small ribosomal subunit protein uS19, superfamily	Homologous Superfamily
J [auth t]	IPR020934	Small ribosomal subunit protein uS19, conserved site	Conserved Site
D [auth d]	IPR001351	Small ribosomal subunit protein uS3, C-terminal	Domain
D [auth d]	IPR009019	K homology domain superfamily, prokaryotic type	Homologous Superfamily
D [auth d]	IPR004087	K Homology domain	Domain
D [auth d]	IPR004044	K Homology domain, type 2	Domain
D [auth d]	IPR015946	K homology domain-like, alpha/beta	Homologous Superfamily
D [auth d]	IPR036419	Ribosomal protein S3, C-terminal domain superfamily	Homologous Superfamily
D [auth d]	IPR005704	Small ribosomal subunit protein uS3, bacterial-type	Family
D [auth d]	IPR018280	Small ribosomal subunit protein uS3, conserved site	Conserved Site
E [auth h]	IPR020606	Small ribosomal subunit protein uS7, conserved site	Conserved Site
E [auth h]	IPR000235	Small ribosomal subunit protein uS7	Family
E [auth h]	IPR005717	Small ribosomal subunit protein uS7, bacterial/organellar-type	Family
E [auth h]	IPR036823	Small ribosomal subunit protein uS7 domain superfamily	Homologous Superfamily
E [auth h]	IPR023798	Small ribosomal subunit protein uS7 domain	Domain
F [auth j]	IPR020574	Small ribosomal subunit protein uS9, conserved site	Conserved Site
F [auth j]	IPR023035	Small ribosomal subunit protein uS9, bacterial/plastid	Family
F [auth j]	IPR020568	Ribosomal protein uS5 domain 2-type superfamily	Homologous Superfamily
F [auth j]	IPR000754	Small ribosomal subunit protein uS9	Family
F [auth j]	IPR014721	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Homologous Superfamily
G [auth k]	IPR001848	Small ribosomal subunit protein uS10	Family
G [auth k]	IPR027486	Small ribosomal subunit protein uS10 domain	Domain
G [auth k]	IPR036838	Small ribosomal subunit protein uS10 domain superfamily	Homologous Superfamily
G [auth k]	IPR018268	Small ribosomal subunit protein uS10, conserved site	Conserved Site
H [auth n]	IPR027437	Small ribosomal subunit protein uS13, C-terminal	Homologous Superfamily
H [auth n]	IPR001892	Small ribosomal subunit protein uS13	Family
H [auth n]	IPR018269	Small ribosomal subunit protein uS13, conserved site	Conserved Site
H [auth n]	IPR010979	Small ribosomal subunit protein uS13-like, H2TH	Homologous Superfamily
H [auth n]	IPR019980	Small ribosomal subunit protein uS13, bacterial-type	Family
I [auth o]	IPR001209	Small ribosomal subunit protein uS14	Family
I [auth o]	IPR018271	Small ribosomal subunit protein uS14, conserved site	Conserved Site
I [auth o]	IPR023036	Small ribosomal subunit protein uS14, bacteria/plastid	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

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6YS5

Acinetobacter baumannii ribosome-amikacin complex - 30S subunit head

External Resource: Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Domain Annotation: ECOD Classification ECOD Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage