Cryo-EM structure of the 50S ribosomal subunit at 2.58 Angstroms with modeled GBC SecM peptide
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| A [auth 0] | SCOP2B Superfamily | L28p-like | 8035424 | 3001966 | SCOP2B (2022-06-29) |
| B [auth 1] | SCOP2 Family | Ribosomal protein L29 (L29p) | 8096369 | 4000600 | SCOP2 (2022-06-29) |
| B [auth 1] | SCOP2 Superfamily | Ribosomal protein L29 (L29p) | 8096370 | 3000713 | SCOP2 (2022-06-29) |
| C [auth 2] | SCOP2 Family | Ribosomal protein L30p/L7e | 8096371 | 4001360 | SCOP2 (2022-06-29) |
| C [auth 2] | SCOP2 Superfamily | Ribosomal protein L30p/L7e | 8096372 | 3001378 | SCOP2 (2022-06-29) |
| D [auth 3] | SCOP2 Family | Ribosomal protein L32p | 8096379 | 4000508 | SCOP2 (2022-06-29) |
| D [auth 3] | SCOP2 Superfamily | Zn-binding ribosomal proteins | 8096380 | 3001320 | SCOP2 (2022-06-29) |
| E [auth 4] | SCOP2 Family | Ribosomal protein L33p | 8096361 | 4000511 | SCOP2 (2022-06-29) |
| E [auth 4] | SCOP2 Superfamily | Zn-binding ribosomal proteins | 8096362 | 3001320 | SCOP2 (2022-06-29) |
| G [auth 7] | SCOP2B Superfamily | L35p-like | 8035388 | 3000790 | SCOP2B (2022-06-29) |
| H [auth 8] | SCOP2B Superfamily | Ribosomal protein L36 | 8035391 | 3001346 | SCOP2B (2022-06-29) |
| K [auth c] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8035393 | 3000334 | SCOP2B (2022-06-29) |
| K [auth c] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8035394 | 3000135 | SCOP2B (2022-06-29) |
| L [auth d] | SCOP2B Superfamily | Translational proteins | 8032955 | 3000811 | SCOP2B (2022-06-29) |
| M [auth e] | SCOP2 Family | Ribosomal protein L4 | 8096355 | 4003628 | SCOP2 (2022-06-29) |
| M [auth e] | SCOP2 Superfamily | Ribosomal protein L4 | 8096356 | 3001146 | SCOP2 (2022-06-29) |
| N [auth f] | SCOP2 Family | Ribosomal protein L5 | 8096351 | 4001498 | SCOP2 (2022-06-29) |
| N [auth f] | SCOP2 Superfamily | RL5-like | 8096352 | 3001709 | SCOP2 (2022-06-29) |
| O [auth g] | SCOP2B Superfamily | Ribosomal protein L6 | 8035398 | 3000724 | SCOP2B (2022-06-29) |
| O [auth g] | SCOP2B Superfamily | Ribosomal protein L6 | 8035397 | 3000724 | SCOP2B (2022-06-29) |
| Q [auth j] | SCOP2 Family | Ribosomal protein L13 | 8096349 | 4003623 | SCOP2 (2022-06-29) |
| Q [auth j] | SCOP2 Superfamily | Ribosomal protein L13 | 8096350 | 3001134 | SCOP2 (2022-06-29) |
| R [auth k] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8103358 | 3000433 | SCOP2B (2022-06-29) |
| S [auth l] | SCOP2B Superfamily | Ribosomal proteins L15p and L18e | 8070553 | 3001045 | SCOP2B (2022-06-29) |
| T [auth m] | SCOP2 Family | Ribosomal protein L16p | 8096365 | 4003717 | SCOP2 (2022-06-29) |
| T [auth m] | SCOP2 Superfamily | Ribosomal protein L16p/L10e | 8096366 | 3000884 | SCOP2 (2022-06-29) |
| U [auth n] | SCOP2B Superfamily | Prokaryotic ribosomal protein L17 | 8035409 | 3000995 | SCOP2B (2022-06-29) |
| W [auth p] | SCOP2 Family | Ribosomal protein L19 | 8096363 | 4001761 | SCOP2 (2022-06-29) |
| W [auth p] | SCOP2 Superfamily | Translation proteins SH3-like KOW motif containing domain | 8096364 | 3000334 | SCOP2 (2022-06-29) |
| X [auth q] | SCOP2 Family | Ribosomal protein L20 | 8096381 | 4001930 | SCOP2 (2022-06-29) |
| X [auth q] | SCOP2 Superfamily | Ribosomal protein L20 | 8096382 | 3000563 | SCOP2 (2022-06-29) |
| Y [auth r] | SCOP2 Family | Ribosomal protein l21p | 8096353 | 4001630 | SCOP2 (2022-06-29) |
| Y [auth r] | SCOP2 Superfamily | l21p-like | 8096354 | 3002005 | SCOP2 (2022-06-29) |
| Z [auth s] | SCOP2 Family | Ribosomal protein L22 | 8096335 | 4001212 | SCOP2 (2022-06-29) |
| Z [auth s] | SCOP2 Superfamily | Ribosomal protein L22 | 8096336 | 3001078 | SCOP2 (2022-06-29) |
| AA [auth t] | SCOP2B Superfamily | Ribosomal proteins S24e, L23 and L15e | 8035415 | 3000210 | SCOP2B (2022-06-29) |
| BA [auth u] | SCOP2 Family | Ribosomal proteins L24p and L21e | 8096357 | 4001752 | SCOP2 (2022-06-29) |
| BA [auth u] | SCOP2 Superfamily | Translation proteins SH3-like KOW motif containing domain | 8096358 | 3000334 | SCOP2 (2022-06-29) |
| DA [auth w] | SCOP2B Superfamily | Ribosomal protein L25-like | 8042538 | 3001161 | SCOP2B (2022-06-29) |
| EA [auth y] | SCOP2 Family | Ribosomal L27 protein | 8096337 | 4001900 | SCOP2 (2022-06-29) |
| EA [auth y] | SCOP2 Superfamily | Ribosomal L27 protein-like | 8096338 | 3000539 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A [auth 0] | Utp12 | e6ys301 | A: beta barrels | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Utp12 | ECOD (v294.2) |
| B [auth 1] | Utp12 | e6ys311 | A: beta barrels | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Utp12 | ECOD (v294.2) |
| C [auth 2] | Utp12 | e6ys321 | A: beta barrels | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Utp12 | ECOD (v294.2) |
| D [auth 3] | Utp12 | e6ys331 | A: beta barrels | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Utp12 | ECOD (v294.2) |
| E [auth 4] | Utp12 | e6ys341 | A: beta barrels | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Utp12 | ECOD (v294.2) |
| F [auth 6] | Utp12 | e6ys361 | A: beta barrels | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Utp12 | ECOD (v294.2) |
| G [auth 7] | Utp12 | e6ys371 | A: beta barrels | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Utp12 | ECOD (v294.2) |
| H [auth 8] | Utp12 | e6ys381 | A: beta barrels | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Utp12 | ECOD (v294.2) |
| K [auth c] | Utp12 | e6ys3c1 | A: beta barrels | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Utp12 | ECOD (v294.2) |
| L [auth d] | Utp12 | e6ys3d1 | A: beta barrels | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Utp12 | ECOD (v294.2) |
| M [auth e] | Utp12 | e6ys3e1 | A: beta barrels | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Utp12 | ECOD (v294.2) |
| N [auth f] | Utp12 | e6ys3f1 | A: beta barrels | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Utp12 | ECOD (v294.2) |
| O [auth g] | Utp12 | e6ys3g1 | A: beta barrels | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Utp12 | ECOD (v294.2) |
| P [auth h] | Utp12 | e6ys3h1 | A: beta barrels | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Utp12 | ECOD (v294.2) |
| Q [auth j] | Utp12 | e6ys3j1 | A: beta barrels | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Utp12 | ECOD (v294.2) |
| R [auth k] | Utp12 | e6ys3k1 | A: beta barrels | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Utp12 | ECOD (v294.2) |
| S [auth l] | Utp12 | e6ys3l1 | A: beta barrels | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Utp12 | ECOD (v294.2) |
| T [auth m] | Utp12 | e6ys3m1 | A: beta barrels | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Utp12 | ECOD (v294.2) |
| U [auth n] | Utp12 | e6ys3n1 | A: beta barrels | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Utp12 | ECOD (v294.2) |
| V [auth o] | Utp12 | e6ys3o1 | A: beta barrels | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Utp12 | ECOD (v294.2) |
| W [auth p] | Utp12 | e6ys3p1 | A: beta barrels | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Utp12 | ECOD (v294.2) |
| X [auth q] | Utp12 | e6ys3q1 | A: beta barrels | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Utp12 | ECOD (v294.2) |
| Y [auth r] | Utp12 | e6ys3r1 | A: beta barrels | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Utp12 | ECOD (v294.2) |
| Z [auth s] | Utp12 | e6ys3s1 | A: beta barrels | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Utp12 | ECOD (v294.2) |
| AA [auth t] | Utp12 | e6ys3t1 | A: beta barrels | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Utp12 | ECOD (v294.2) |
| BA [auth u] | Utp12 | e6ys3u1 | A: beta barrels | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Utp12 | ECOD (v294.2) |
| DA [auth w] | Utp12 | e6ys3w1 | A: beta barrels | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Utp12 | ECOD (v294.2) |
| EA [auth y] | Utp12 | e6ys3y1 | A: beta barrels | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Utp12 | ECOD (v294.2) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| O [auth g] | 3.90.930.12 | Alpha Beta | Alpha-Beta Complex | Outer Surface Protein A | domain 3 | CATH (utative) |
| S [auth l] | 3.100.10.10 | Alpha Beta | Ribosomal Protein L15 | Chain: K | domain 2 | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| A [auth 0] | PF00830 | Ribosomal L28 family (Ribosomal_L28) | Ribosomal L28 family | - | Family |
| B [auth 1] | PF00831 | Ribosomal L29 protein (Ribosomal_L29) | Ribosomal L29 protein | - | Family |
| C [auth 2] | PF00327 | Ribosomal protein L30p/L7e (Ribosomal_L30) | Ribosomal protein L30p/L7e | This family includes prokaryotic L30 and eukaryotic L7. | Domain |
| D [auth 3] | PF01783 | Ribosomal L32p protein family (Ribosomal_L32p) | Ribosomal L32p protein family | - | Family |
| E [auth 4] | PF00471 | Ribosomal protein L33 (Ribosomal_L33) | Ribosomal protein L33 | - | Family |
| F [auth 6] | PF00468 | Ribosomal protein L34 (Ribosomal_L34) | Ribosomal protein L34 | - | Family |
| G [auth 7] | PF01632 | Ribosomal protein L35 (Ribosomal_L35p) | Ribosomal protein L35 | - | Family |
| H [auth 8] | PF00444 | Ribosomal protein L36 (Ribosomal_L36) | Ribosomal protein L36 | Domain | |














