6YPE
Crystal structure of the human neuronal pentraxin 1 (NP1) pentraxin (PTX) domain.
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d6ypea_ | All beta proteins | Concanavalin A-like lectins/glucanases | Concanavalin A-like lectins/glucanases | automated matches | automated matches | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B | d6ypeb_ | All beta proteins | Concanavalin A-like lectins/glucanases | Concanavalin A-like lectins/glucanases | automated matches | automated matches | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Pentraxin (pentaxin) | 8099185 | 4002704 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Concanavalin A-like lectins/glucanases | 8099186 | 3000120 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | Concanavalin A-like lectins/glucanases | 8099186 | 3000120 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Pentaxin | e6ypeA1 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Concanavalin A-like lectins/glucanases | F: Pentaxin | ECOD (1.6) |
B | Pentaxin | e6ypeB1 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Concanavalin A-like lectins/glucanases | F: Pentaxin | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00354 | Pentaxin family (Pentaxin) | Pentaxin family | Pentaxins are also known as pentraxins. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR001759 | Pentraxin-related | Family | |
IPR030476 | Pentaxin, conserved site | Conserved Site | |
IPR051360 | Neuronal Pentraxin and Related | Family | |
IPR013320 | Concanavalin A-like lectin/glucanase domain superfamily | Homologous Superfamily |