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 6YP7 | pdb_00006yp7

PSII-LHCII C2S2 supercomplex from Pisum sativum grown in high light conditions


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
N [auth i]WD40e6yp7i1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: WD40ECOD (v295.2)
EA [auth I]WD40e6yp7I1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: WD40ECOD (v295.2)
M [auth h]WD40e6yp7h1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: WD40ECOD (v295.2)
DA [auth H]WD40e6yp7H1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: WD40ECOD (v295.2)
L [auth f]WD40e6yp7f1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: WD40ECOD (v295.2)
CA [auth F]WD40e6yp7F1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: WD40ECOD (v295.2)
K [auth e]WD40e6yp7e1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: WD40ECOD (v295.2)
BA [auth E]WD40e6yp7E1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: WD40ECOD (v295.2)
J [auth d]WD40e6yp7d1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: WD40ECOD (v295.2)
AA [auth D]WD40e6yp7D1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: WD40ECOD (v295.2)
Z [auth C]WD40e6yp7C1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: WD40ECOD (v295.2)
I [auth c]WD40e6yp7c1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: WD40ECOD (v295.2)
Y [auth B]WD40e6yp7B1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: WD40ECOD (v295.2)
H [auth b]WD40e6yp7b1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: WD40ECOD (v295.2)
QA [auth S]WD40e6yp7S1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: WD40ECOD (v295.2)
PA [auth s]WD40e6yp7s1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: WD40ECOD (v295.2)
X [auth A]WD40e6yp7A1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: WD40ECOD (v295.2)
G [auth a]WD40e6yp7a1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: WD40ECOD (v295.2)
RA [auth R]WD40e6yp7R1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: WD40ECOD (v295.2)
OA [auth r]WD40e6yp7r1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: WD40ECOD (v295.2)
W [auth z]WD40e6yp7z1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: WD40ECOD (v295.2)
NA [auth Z]WD40e6yp7Z1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: WD40ECOD (v295.2)
V [auth x]WD40e6yp7x1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: WD40ECOD (v295.2)
MA [auth X]WD40e6yp7X1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: WD40ECOD (v295.2)
U [auth w]WD40e6yp7w1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: WD40ECOD (v295.2)
LA [auth W]WD40e6yp7W1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: WD40ECOD (v295.2)
T [auth t]WD40e6yp7t1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: WD40ECOD (v295.2)
KA [auth T]WD40e6yp7T1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: WD40ECOD (v295.2)
S [auth o]WD40e6yp7o1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: WD40ECOD (v295.2)
JA [auth O]WD40e6yp7O1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: WD40ECOD (v295.2)
R [auth m]WD40e6yp7m1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: WD40ECOD (v295.2)
IA [auth M]WD40e6yp7M1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: WD40ECOD (v295.2)
Q [auth l]WD40e6yp7l1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: WD40ECOD (v295.2)
HA [auth L]WD40e6yp7L1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: WD40ECOD (v295.2)
P [auth k]WD40e6yp7k1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: WD40ECOD (v295.2)
GA [auth K]WD40e6yp7K1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: WD40ECOD (v295.2)
O [auth j]WD40e6yp7j1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: WD40ECOD (v295.2)
FA [auth J]WD40e6yp7J1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: WD40ECOD (v295.2)
F [auth Y]WD40e6yp7Y1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: WD40ECOD (v295.2)
E [auth N]WD40e6yp7N1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: WD40ECOD (v295.2)
D [auth G]WD40e6yp7G1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: WD40ECOD (v295.2)
C [auth y]WD40e6yp7y1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: WD40ECOD (v295.2)
B [auth n]WD40e6yp7n1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: WD40ECOD (v295.2)
A [auth g]WD40e6yp7g1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: WD40ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
EA [auth I],
N [auth i]
Photosystem II reaction center protein I-
DA [auth H],
M [auth h]
Photosystem II reaction center protein H
CA [auth F],
L [auth f]
Cytochrome b559 subunit beta
BA [auth E],
K [auth e]
Cytochrome b559 subunit alpha
AA [auth D],
J [auth d]
Photosystem II D2 protein
I [auth c],
Z [auth C]
Photosystem II CP43 reaction center protein
H [auth b],
Y [auth B]
Photosystem II CP47 reaction center protein
PA [auth s],
QA [auth S]
Light harvesting chlorophyll a/b-binding protein Lhcb5, CP26---
G [auth a],
X [auth A]
Photosystem II protein D1
OA [auth r],
RA [auth R]
Light harvesting chlorophyll a/b-binding protein Lhcb4.3---
NA [auth Z],
W [auth z]
Photosystem II reaction center protein Z-
MA [auth X],
V [auth x]
Ultraviolet-B-repressible protein-
LA [auth W],
U [auth w]
Photosystem II reaction center protein W-
KA [auth T],
T [auth t]
Photosystem II reaction center protein T-
JA [auth O],
S [auth o]
Oxygen-evolving enhancer protein 1, chloroplastic
IA [auth M],
R [auth m]
Photosystem II reaction center protein M-
HA [auth L],
Q [auth l]
Photosystem II reaction center protein L-
GA [auth K],
P [auth k]
Photosystem II reaction center protein K-
FA [auth J],
O [auth j]
Photosystem II reaction center protein J-
Chlorophyll a-b binding protein 8, chloroplastic-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
EA [auth I],
N [auth i]
IPR037271Photosystem II PsbI superfamilyHomologous Superfamily
EA [auth I],
N [auth i]
IPR003686Photosystem II PsbIFamily
DA [auth H],
M [auth h]
IPR036863Photosystem II reaction centre protein H superfamilyHomologous Superfamily
DA [auth H],
M [auth h]
IPR001056Photosystem II reaction centre protein HFamily
CA [auth F],
L [auth f]
IPR006241Photosystem II cytochrome b559, beta subunitFamily
CA [auth F],
L [auth f]
IPR013081Photosystem II cytochrome b559, N-terminalDomain
CA [auth F],
L [auth f]
IPR006216Photosystem II cytochrome b559, conserved siteConserved Site
BA [auth E],
K [auth e]
IPR013081Photosystem II cytochrome b559, N-terminalDomain
BA [auth E],
K [auth e]
IPR006217Photosystem II cytochrome b559, alpha subunitFamily
BA [auth E],
K [auth e]
IPR013082Photosystem II cytochrome b559, alpha subunit, lumenal regionDomain
BA [auth E],
K [auth e]
IPR037025Photosystem II cytochrome b559, alpha subunit superfamilyHomologous Superfamily
BA [auth E],
K [auth e]
IPR006216Photosystem II cytochrome b559, conserved siteConserved Site
AA [auth D],
J [auth d]
IPR005868Photosystem II D2Family
AA [auth D],
J [auth d]
IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
AA [auth D],
J [auth d]
IPR000484Photosynthetic reaction centre, L/MFamily
AA [auth D],
J [auth d]
IPR055265Photosynthetic reaction centre, L/M, conserved siteConserved Site
AA [auth D],
J [auth d]
IPR055266Photosystem II protein D1/D2Family
I [auth c],
Z [auth C]
IPR036001Photosystem antenna protein-like superfamilyHomologous Superfamily
I [auth c],
Z [auth C]
IPR000932Photosystem antenna protein-likeFamily
I [auth c],
Z [auth C]
IPR005869Photosystem II CP43 reaction centre proteinFamily
I [auth c],
Z [auth C]
IPR044900Photosystem II CP43 reaction centre protein superfamilyHomologous Superfamily
H [auth b],
Y [auth B]
IPR036001Photosystem antenna protein-like superfamilyHomologous Superfamily
H [auth b],
Y [auth B]
IPR000932Photosystem antenna protein-likeFamily
H [auth b],
Y [auth B]
IPR017486Photosystem II CP47 reaction centre proteinFamily
G [auth a],
X [auth A]
IPR005867Photosystem II protein D1Family
G [auth a],
X [auth A]
IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
G [auth a],
X [auth A]
IPR000484Photosynthetic reaction centre, L/MFamily
G [auth a],
X [auth A]
IPR055265Photosynthetic reaction centre, L/M, conserved siteConserved Site
G [auth a],
X [auth A]
IPR055266Photosystem II protein D1/D2Family
NA [auth Z],
W [auth z]
IPR036512Photosystem II PsbZ superfamilyHomologous Superfamily
NA [auth Z],
W [auth z]
IPR002644Photosystem II PsbZ, reaction centreFamily
MA [auth X],
V [auth x]
IPR009518Photosystem II PsbXFamily
MA [auth X],
V [auth x]
IPR023431Photosystem II PsbX, type 1 subfamilyFamily
LA [auth W],
U [auth w]
IPR009806Photosystem II PsbW, class 2Family
KA [auth T],
T [auth t]
IPR001743Photosystem II PsbTFamily
KA [auth T],
T [auth t]
IPR037268Photosystem II PsbT superfamilyHomologous Superfamily
JA [auth O],
S [auth o]
IPR011250Outer membrane protein/outer membrane enzyme PagP-like, beta-barrel superfamilyHomologous Superfamily
JA [auth O],
S [auth o]
IPR002628Photosystem II extrinsic protein OFamily
IA [auth M],
R [auth m]
IPR007826Photosystem II PsbMFamily
IA [auth M],
R [auth m]
IPR037269Photosystem II PsbM superfamilyHomologous Superfamily
HA [auth L],
Q [auth l]
IPR003372Photosystem II PsbLFamily
HA [auth L],
Q [auth l]
IPR037266Photosystem II PsbL superfamilyHomologous Superfamily
GA [auth K],
P [auth k]
IPR037270Photosystem II PsbK superfamilyHomologous Superfamily
GA [auth K],
P [auth k]
IPR003687Photosystem II PsbKFamily
FA [auth J],
O [auth j]
IPR002682Photosystem II PsbJFamily
FA [auth J],
O [auth j]
IPR037267Photosystem II PsbJ superfamilyHomologous Superfamily
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
IPR022796Chlorophyll A-B binding proteinFamily