Annotations: 6YNW

Cryo-EM structure of Tetrahymena thermophila mitochondrial ATP synthase - central stalk/cring

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD
Membrane Protein Annotation: mpstruc

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
K [auth g]	SCOP2B Superfamily	ATP synthase gamma subunit-like	8099238	3000451	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
K [auth g]	SpoU_methylase	e6ynwg1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SpoU_methylase	ECOD (v295.2)
J [auth Q]	SpoU_methylase	e6ynwQ1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SpoU_methylase	ECOD (v295.2)
I [auth H]	SpoU_methylase	e6ynwH1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SpoU_methylase	ECOD (v295.2)
H [auth I]	SpoU_methylase	e6ynwI1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SpoU_methylase	ECOD (v295.2)
G [auth J]	SpoU_methylase	e6ynwJ1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SpoU_methylase	ECOD (v295.2)
F [auth K]	SpoU_methylase	e6ynwK1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SpoU_methylase	ECOD (v295.2)
E [auth L]	SpoU_methylase	e6ynwL1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SpoU_methylase	ECOD (v295.2)
D [auth M]	SpoU_methylase	e6ynwM1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SpoU_methylase	ECOD (v295.2)
C [auth N]	SpoU_methylase	e6ynwN1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SpoU_methylase	ECOD (v295.2)
B [auth O]	SpoU_methylase	e6ynwO1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SpoU_methylase	ECOD (v295.2)
A [auth P]	SpoU_methylase	e6ynwP1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: SpoU_methylase	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
J [auth Q]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (utative)
I [auth H]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (utative)
H [auth I]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (utative)
G [auth J]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (utative)
F [auth K]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (utative)
E [auth L]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (utative)
D [auth M]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (utative)
C [auth N]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (utative)
B [auth O]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (utative)
A [auth P]	1.20.20.10	Mainly Alpha	Up-down Bundle	F1FO ATP Synthase	F1F0 ATP synthase subunit C	CATH (utative)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
M [auth e]	subunit epsilon	-	-	-
L [auth d]	subunit delta	-	-	-
K [auth g]	subunit gamma	monoatomic cation transmembrane transporter activity proton transmembrane transporter activity monoatomic ion channel activity proton channel activity proton-transporting ATP synthase activity, rotational mechanism monoatomic cation channel activity passive transmembrane transporter activity channel activity monoatomic ion transmembrane transporter activity transporter activity transmembrane transporter activity catalytic activity ligase activity	-	respiratory chain complex protein-containing complex catalytic complex proton-transporting ATP synthase complex membrane membrane protein complex cation channel complex transporter complex cellular anatomical structure proton-transporting two-sector ATPase complex transmembrane transporter complex monoatomic ion channel complex
A [auth P], B [auth O], C [auth N], D [auth M], E [auth L], A [auth P], B [auth O], C [auth N], D [auth M], E [auth L], F [auth K], G [auth J], H [auth I], I [auth H], J [auth Q]	subunit c	monoatomic cation transmembrane transporter activity proton transmembrane transporter activity monoatomic ion transmembrane transporter activity transporter activity transmembrane transporter activity	-	protein-containing complex cellular anatomical structure proton-transporting two-sector ATPase complex membrane membrane protein complex proton-transporting two-sector ATPase complex, proton-transporting domain

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
K [auth g]	IPR000131	ATP synthase, F1 complex, gamma subunit	Family
K [auth g]	IPR035968	ATP synthase, F1 complex, gamma subunit superfamily	Homologous Superfamily
A [auth P], B [auth O], C [auth N], D [auth M], E [auth L], A [auth P], B [auth O], C [auth N], D [auth M], E [auth L], F [auth K], G [auth J], H [auth I], I [auth H], J [auth Q]	IPR035921	F/V-ATP synthase subunit C superfamily	Homologous Superfamily
A [auth P], B [auth O], C [auth N], D [auth M], E [auth L], A [auth P], B [auth O], C [auth N], D [auth M], E [auth L], F [auth K], G [auth J], H [auth I], I [auth H], J [auth Q]	IPR038662	F1F0 ATP synthase subunit C superfamily	Homologous Superfamily
A [auth P], B [auth O], C [auth N], D [auth M], E [auth L], A [auth P], B [auth O], C [auth N], D [auth M], E [auth L], F [auth K], G [auth J], H [auth I], I [auth H], J [auth Q]	IPR020537	ATP synthase, F0 complex, subunit C, DCCD-binding site	Binding Site
A [auth P], B [auth O], C [auth N], D [auth M], E [auth L], A [auth P], B [auth O], C [auth N], D [auth M], E [auth L], F [auth K], G [auth J], H [auth I], I [auth H], J [auth Q]	IPR002379	V-ATPase proteolipid subunit C-like domain	Domain

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A [auth P], B [auth O], C [auth N], D [auth M], E [auth L] A [auth P], B [auth O], C [auth N], D [auth M], E [auth L], F [auth K], G [auth J], H [auth I], I [auth H], J [auth Q], K [auth g]	OPM	Transmembrane	Alpha-helical polytopic	Proton or Sodium translocating F-type, V-type and A-type ATPases	V-type and F-type ATPases

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A [auth P], B [auth O], C [auth N], D [auth M], E [auth L] A [auth P], B [auth O], C [auth N], D [auth M], E [auth L], F [auth K], G [auth J], H [auth I], I [auth H], J [auth Q], K [auth g]	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
A [auth P], B [auth O], C [auth N], D [auth M], E [auth L] A [auth P], B [auth O], C [auth N], D [auth M], E [auth L], F [auth K], G [auth J], H [auth I], I [auth H], J [auth Q], K [auth g]	MemProtMD	Annotated as membrane protein by MemProtMD

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A [auth P], B [auth O], C [auth N], D [auth M], E [auth L] A [auth P], B [auth O], C [auth N], D [auth M], E [auth L], F [auth K], G [auth J], H [auth I], I [auth H], J [auth Q], K [auth g]	mpstruc	TRANSMEMBRANE PROTEINS: ALPHA-HELICAL	F-type ATPase	F₁F_o type III ATP synthase (composite structure, dimeric)