6YKW
Neisseria gonorrhoeae Leucyl-tRNA Synthetase in Complex with Compound 11h
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF13603 | e6ykwA3 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: PF13603 | ECOD (1.6) |
A | PF00133,PF08264 | e6ykwA5 | A: alpha bundles | X: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases (From Topology) | H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases (From Topology) | T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | F: PF00133,PF08264 | ECOD (1.6) |
A | F_UNCLASSIFIED | e6ykwA7 | A: a+b two layers | X: beta-Grasp | H: beta-grasp fold domain in leucine-tRNA ligase (From Topology) | T: beta-grasp fold domain in leucine-tRNA ligase | F: F_UNCLASSIFIED | ECOD (1.6) |
A | PF00133 | e6ykwA6 | A: a/b three-layered sandwiches | X: HUP domain-like | H: HUP domains (From Topology) | T: HUP domains | F: PF00133 | ECOD (1.6) |
A | F_UNCLASSIFIED | e6ykwA1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: F_UNCLASSIFIED | ECOD (1.6) |
A | PF00133 | e6ykwA4 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF00133 | ECOD (1.6) |
A | F_UNCLASSIFIED | e6ykwA2 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) (From Topology) | T: Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) | F: F_UNCLASSIFIED | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF09334 | tRNA synthetases class I (M) (tRNA-synt_1g) | tRNA synthetases class I (M) | - | Family | |
PF13603 | Leucyl-tRNA synthetase, editing domain (tRNA-synt_1_2) | Leucyl-tRNA synthetase, editing domain | This entry represents the editing domain in Leucine-tRNA ligase or Leucyl-tRNA synthetase, EC:6.1.1.4. | Domain | |
PF08264 | Anticodon-binding domain of tRNA ligase (Anticodon_1) | Anticodon-binding domain of tRNA ligase | This domain is found mainly hydrophobic tRNA synthetases. The domain binds to the anticodon of the tRNA ligase. | Domain | |
PF00133 | tRNA synthetases class I (I, L, M and V) (tRNA-synt_1) | tRNA synthetases class I (I, L, M and V) | Other tRNA synthetase sub-families are too dissimilar to be included. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR025709 | Leucyl-tRNA synthetase, editing domain | Domain | |
IPR001412 | Aminoacyl-tRNA synthetase, class I, conserved site | Conserved Site | |
IPR015413 | Methionyl/Leucyl tRNA synthetase | Domain | |
IPR014729 | Rossmann-like alpha/beta/alpha sandwich fold | Homologous Superfamily | |
IPR002300 | Aminoacyl-tRNA synthetase, class Ia | Domain | |
IPR009008 | Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain | Homologous Superfamily | |
IPR009080 | Aminoacyl-tRNA synthetase, class Ia, anticodon-binding | Homologous Superfamily | |
IPR013155 | Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding | Domain | |
IPR002302 | Leucine-tRNA ligase | Family |