Annotations: 6YBA

HAdV-F41 Capsid

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Raptor_N	e6ybaA1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
B	Raptor_N	e6ybaB1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
C	Raptor_N	e6ybaC1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
D	Raptor_N	e6ybaD1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
E	Raptor_N	e6ybaE1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
F	Raptor_N	e6ybaF1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
G	Raptor_N	e6ybaG1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
H	Ras	e6ybaH1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Ras	ECOD (v294.2)
I	Raptor_N	e6ybaI1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
J	Raptor_N	e6ybaJ1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
K	Raptor_N	e6ybaK1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
L	Raptor_N	e6ybaL1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
M	Ras	e6ybaM1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Ras	ECOD (v294.2)
N	Ras	e6ybaN1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Ras	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
M	PF01686	Adenovirus penton base protein (Adeno_Penton_B)	Adenovirus penton base protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	Hexon protein	structural molecule activity	biological process involved in interspecies interaction between organisms microtubule-dependent intracellular transport of viral material microtubule-dependent intracellular transport of viral material towards nucleus intracellular transport of virus viral process viral life cycle transport of virus transport of viral material towards nucleus biological process involved in symbiotic interaction symbiont entry into host cell symbiont entry into host biological process involved in interaction with host	host cellular component cellular anatomical structure host cell other organism part host intracellular membrane-bounded organelle host intracellular part host cell part host intracellular region host cell nucleus host intracellular organelle viral capsid icosahedral viral capsid virion component T=25 icosahedral viral capsid
M	Penton protein	structural molecule activity	virion attachment to host cell biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell viral process viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction symbiont entry into host cell symbiont entry into host endocytosis involved in viral entry into host cell	host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle viral capsid icosahedral viral capsid virion component T=25 icosahedral viral capsid
N	Pre-hexon-linking protein IIIa	-	-	host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle viral capsid virion component viral capsid, decoration
O, P	Pre-hexon-linking protein VIII	hexon binding protein binding binding	-	viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle
Q, R, S, T	Hexon-interlacing protein	hexon binding protein binding binding	biological process involved in interspecies interaction between organisms symbiont entry into host cell viral process symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction	host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle viral capsid virion component viral capsid, decoration
U, V, X [auth Y], Y [auth u]	Pre-protein VI	-	biological process involved in interspecies interaction between organisms microtubule-dependent intracellular transport of viral material microtubule-dependent intracellular transport of viral material towards nucleus intracellular transport of virus viral process viral life cycle transport of virus transport of viral material towards nucleus biological process involved in symbiotic interaction symbiont entry into host cell symbiont entry into host lysis of host organelle involved in viral entry into host cell biological process involved in interaction with host exit from host cell biological process involved in interspecies interaction between organisms microtubule-dependent intracellular transport of viral material microtubule-dependent intracellular transport of viral material towards nucleus intracellular transport of virus viral process viral life cycle transport of virus transport of viral material towards nucleus biological process involved in symbiotic interaction symbiont entry into host cell symbiont entry into host lysis of host organelle involved in viral entry into host cell biological process involved in interaction with host exit from host cell viral release from host cell	host cellular component cellular anatomical structure host cell other organism part viral capsid virion component viral procapsid host intracellular membrane-bounded organelle host intracellular part host cell part host intracellular region host cell nucleus host intracellular organelle host cell cytoplasm
W, Z [auth w]	Pre-histone-like nucleoprotein	DNA binding binding nucleic acid binding	biological process involved in interspecies interaction between organisms viral penetration into host nucleus intracellular transport of virus viral process viral life cycle transport of virus biological process involved in symbiotic interaction symbiont entry into host cell symbiont entry into host biological process involved in interaction with host	host cellular component cellular anatomical structure host cell other organism part viral capsid virion component host intracellular membrane-bounded organelle host intracellular part host cell nucleus host cell nucleolus host cell nuclear part host intracellular organelle host cell part host intracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR044942	Adenovirus Pll, hexon, subdomain 2	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR016110	Adenovirus Pll, hexon, subdomain 3	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR016107	Adenovirus Pll, hexon, N-terminal	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR016108	Adenovirus Pll, hexon, C-terminal	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR016112	Group II dsDNA virus coat/capsid protein	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR037542	Adenovirus hexon protein	Family
M	IPR002605	Adenovirus penton base protein	Family
N	IPR003479	Pre-hexon-linking protein IIIa	Family
N	IPR043053	Pre-hexon-linking protein IIIa, N-terminal	Homologous Superfamily
O, P	IPR000646	Pre-hexon-linking protein VIII	Family
Q, R, S, T	IPR005641	Hexon-associated protein IX	Family
U, V, X [auth Y], Y [auth u]	IPR004243	Minor capsid protein VI	Family
W, Z [auth w]	IPR004912	Adenoviral core protein VII	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

6YBA | pdb_00006yba

HAdV-F41 Capsid

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage